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Thursday, 18 July 2024

Toward the ultimate design filter?

 Building a Better Definition of Intelligent Design


1. Previous Efforts to Define Intelligent Design

Existing definitions of intelligent design, whatever their imperfections, have been good enough to inspire a growing body of scientific research and philosophical reflection on the role of intelligence in nature. Under these definitions, intelligent design has become an active and fruitful area of inquiry. Even so, I want in this article to lay out why existing definitions, all of which overlap and are roughly congruent, need improvement. And finally, I want to offer a new and improved definition of intelligent design. 

None of the existing definitions of intelligent design is wrong per se. They hit the target, yet they are not squarely in the bullseye. For my colleagues in the field, these definitions haven’t slowed us down. As it is, the best science happens when scientists reflect deeply about problems and creatively invent new ways to think about and resolve them. Such advances occur without scientists obsessively referring to what some textbook definition says about their field of inquiry. 

Definitional change in science is par for the course: As paradigms shift because of scientific advances, textbook definitions change. Compare heat, which earlier had been defined as a weightless, invisible fluid (the caloric theory) and subsequently was defined as the kinetic energy of molecules (the kinetic theory). Even as paradigms are refined rather than replaced, key definitions get refined. Thus the definition of Bohr’s atom gave way to the definition of Dirac’s atom.

In any case, given how controversial it is to look for and claim to find evidence of intelligent activity in nature, especially in regard to cosmological and biological origins, proponents of intelligent design cannot evade what exactly they mean by intelligent design. Can it rightly be regarded as a scientific theory? Is it coherent, hanging together logically? Is it a religious doctrine, or does it merely have religious implications? Should it have traction in education, the public square, and the courtroom? Such questions are widely asked, and their answer depends on how we define intelligent design. 

There is currently no single standard definition of intelligent design held by everyone in the ID community, though all the definitions are quite close in meaning. The one that until recently I used in my public lectures and that served as my working definition of intelligent design is this: Intelligent design is the study of patterns in nature that are best explained as the product of intelligence. Intelligent design is thus about identifying certain special types of patterns or features in nature and showing how they provide compelling scientific evidence of intelligent causation. 

But note, intelligent design is not just about finding evidence of actual design in nature. Once design is confirmed to exist in nature, a raft of research questions confront the design theorist. I list some of these here to underscore that existing definitions of intelligent design have sufficed to spur a full-fledged ID research program. Note that all these questions can be posed and make perfect sense without getting into the intention or identity of any putative designer. In fact, these questions make perfectly good scientific sense even if one adopts a fictionalist view of any designer. But of course there’s nothing here either to stop a realist view of any designer. Here, then, is a partial list of such research questions: 

Classification — What types of natural systems exhibit compelling evidence for design?
Functionality — What are a designed object’s main and subsidiary functions?
Constraints — What are the constraints within which a designed object functions well and outside of which it breaks?
Evolvability — How much can a designed system evolve with and without externally applied information. 
Transmission — How does an object’s design trace back historically? What is the causal narrative by which the object arose? 
Information tracking — What are the informational inputs by which a designed object is produced? What is its ultimate informational source?
Information density — How densely is information nested in a designed object?
Construction — How was a designed object actually constructed?
Reverse-engineering — Absent how a designed object was actually constructed, how could it have been constructed?
Perturbation — How has the original design been modified and what factors have modified it?
Restoration — Once perturbed, how can the original design be recovered?
Optimality — In what way is the design optimal?

I formulated what until recently was my working definition of intelligent design around 2012. Yet my colleagues in the intelligent-design movement and I had been using variations of it since the 1990s. Speaking for myself, around 2000 I would define intelligent design as the study of signs of intelligence. And earlier still I emphasized the empirical detectability of design (via such signs or patterns). 

Rather than chronologically list the various definitions of intelligent design that my colleagues and I have proposed over the years, let me simply underscore some of the key themes in existing definitions. The following list is meant to be representative, not exhaustive. 

Empirical detectability. Design in nature is not a vague intuition about whether something looks to be the product of intelligence. We can know it when we see it.
Triggering features. Certain features reliably trigger design inferences, providing evidence for design. Such features are often described in terms of patterns, information, signs, or signatures.
Irreducible complexity. Introduced by Michael Behe, this has become a key triggering feature, identifying design for a complex system that consists of numerous interrelated parts each necessary for the system’s primary function. 
Specified complexity. Elaborated by myself, this has likewise become a key triggering feature, identifying design when a highly improbable event (complexity) matches a recognizable pattern (specification). 
Origins vs. operations science. Intelligent design distinguishes origins science, which answers historical questions about how features in nature originated, from operations science, which characterizes ongoing processes observable now.
Inference to the best explanation. Inferring design presupposes a playing field of competing explanations, determining whether design is indeed the best explanation on such grounds as empirical support and causal adequacy.
Separation of causes. Intelligent design separates unintelligent or blind causes on the one hand, typically described in terms of chance and necessity, from intelligent or purposive causes on the other, described in terms of design. 
We may therefore think of my 2012 definition of intelligent design (i.e., the study of patterns in nature best explained as the product of intelligence) as a shorthand for all of the above. Crucial here for design theorists is that compelling empirical evidence could in principle exist for design in nature. Design theorists therefore regard intelligent design as a scientific rather than a religious form of inquiry.

Whatever improvements may be made to this definition of intelligent design, the definition as it stands now is in the right ballpark. For most practical purposes, this definition characterizes how we detect intelligence in nature, namely, through intelligence-signifying patterns. Archeology, the search for extraterrestrial intelligence, forensic science, and many other special sciences accord with this definition. 

2. The Blind-Watchmaker Dialectic

Nevertheless, the current standard definition of intelligent design is problematic. Two main problems confront it. First, it provides no guidance or rationale for explaining phenomena that don’t exhibit intelligence-signifying patterns. Second, it fails to distinguish intelligence and design, treating them as synonymous, even though distinguishing between the two is important and needs to figure into any definition of intelligent design.

To see what’s at stake with this first point, consider the following quote from Richard Dawkins’s The Blind Watchmaker: “Biology is the study of complicated things that give the appearance of having been designed for a purpose.” Dawkins might be happy to concede that in disciplines outside biology, patterns may exist that decisively confirm intelligence. Yet Dawkins is convinced that no such patterns exist in biology, except as might have been put there by human or alien bioengineers.

But leaving aside such human or alien bioengineering, Dawkins rejects that any real design is present in biology. Dawkins’ watchmaker is blind, incapable of real design. Natural selection, operating without intelligent guidance, can for him produce all the features of biological systems that give them the appearance of design — but apart from any actual design.

The current standard definition of intelligent design, when confronted with Dawkins’ blind watchmaker argument, thus leads to a problematic dialectic. This dialectic pits intelligent or teleological causes against unintelligent or blind causes. The intelligent causes produce patterns best explained as the product of intelligence. The unintelligent causes, such as natural selection acting on random variations, produce patterns that appear to be designed although their explanation requires no appeal to actual intelligence. 

This dialectic is problematic because it suggests a natural world in which intelligent and unintelligent causes mix indiscriminately, with no principled way of teasing them apart. Our natural tendency is thus to give precedence to one type of cause over the other. Dawkins, for instance, in holding to an atheistic and materialistic view of nature, will see the fundamental causes operating in nature as unintelligent, with intelligence, as it arises in nature, being merely a byproduct of unintelligent causes that produce beings like ourselves through a blind evolutionary process. 

Intelligence is thus for Dawkins downstream of unintelligence, and so there simply cannot be any patterns in nature that point to an intelligence not ultimately reducible to blind natural forces. Intelligent design, especially insofar as it claims to find real intelligent causation behind biology, is thus an impossibility for Dawkins because the only intelligences that exist for him are evolved intelligences, and intelligent design claims to discover unevolved intelligences.

Theism, obviously, provides the most ready alternative to Dawkins’x atheism. For our purposes, we can construe theism quite broadly to include (and I’m not being exhaustive here) pantheism, panentheism, deism, and traditional theism (as in Judaism, Christianity, and Islam). With theism of any stripe, there are no blind or unintelligent causes per se. Even with process theology and open theism, in which chance processes as exhibited in quantum indeterminacy are beyond the full knowledge and control even of God, there is still the sense that God is using randomness in the service of teleology, and so even in these theologies where God is less than omniscient and omnipotent, there are no fully blind causes to speak of.

3.Primary and Secondary Causation

As representative of the theistic response to Dawkins’s blind-watchmaker dialectic, which pits intelligent against unintelligent causes, I want to focus on the Aristotelian-Thomistic distinction between primary and secondary causation. Primary causation denotes the direct action of God, who is seen as the ultimate source of all being and activity in the universe. God, as the first cause, initiates and sustains all existence and causal powers. Primary causation is rooted in Aristotle’s notion of the unmoved mover and further developed by Thomas Aquinas, for whom God’s will and power are the fundamental cause of everything that happens. Divine causation is not just a one-time occurrence but an ongoing, continuous act of creation and sustenance, ensuring that all things remain in existence and function according to their nature.

Secondary causation, on the other hand, denotes the activity of created beings, which operate within the order established by the primary cause. In this view, creatures are genuine causes of effects in the world, but their causative power is derived from and dependent on God’s primary causation. For instance, in lighting a fire, a person acts as a secondary cause, while God’s primary causation ensures the existence and properties of both the person and the fire, as well as the underlying laws of nature that make this activity possible. This distinction allows for a coherent integration of divine omnipotence with the real efficacy of created agents.

The Aristotelian-Thomistic tradition maintains that while God is the ultimate cause of everything, secondary causes play a true and significant role within the divinely created order of the world. This view of secondary causation implies that all cause and effect in the world ultimately aligns with the divine will, in turn implying that there are no truly blind or unintelligent causes, in contradiction to the materialist atheist, who claims that ultimately there are only blind or unintelligent causes. 

Every action performed by secondary causes is therefore, within the Aristotelian-Thomistic tradition, part of God’s purposeful plan for creation. God’s omniscience and omnipotence extend to all creation details, making even seemingly random events part of a divine plan. But note: secondary causation, though instituted by God, is, unlike primary causation, limited in what it can accomplish. Jesus walking on water, turning water into wine, and resurrecting from the dead are beyond the reach of secondary causation. The limits to secondary causation thus make room for miracles, where God’s primary causation intervenes to surpass the capabilities of secondary causation.

Even though this brief overview of the Aristotelian-Thomistic understanding of primary and secondary causation may seem like a digression, it underscores the need for additional clarification in our standard definition of intelligent design. If an object or event exhibits a pattern that is best explained as the product of intelligence, what are we to make of objects or events that don’t exhibit such patterns? 

From an Aristotelian-Thomistic perspective, anything and everything exhibits the divine intelligence. Thus, it would seem that within this perspective, identifying patterns in nature that signify intelligence, as the standard definition of intelligent design would have it, is useless and misleading. The followers of Aristotle and Thomas already know that everything exhibits intelligence, and intelligent design thus seems to offer no additional insight.

Nonetheless, the idea of intelligence-signifying patterns, which is inherent in the current standard definition of intelligent design, has proven itself to have practical value. Did so-and-so die of natural causes or as a result of foul play? Did so-and-so write that essay unassisted or by plagiarizing? Do the marks on that rock result from wind and erosion or the intentional carving of letters (as in Rosetta Stone)? In such examples, there’s an appeal to intelligence/design that seems vastly stronger and more insistent on the one hand than on the other. Even if neither primary nor secondary causes can capture this difference, it’s a difference that needs to be captured. 

To elaborate on this point, consider SETI, the search for extraterrestrial intelligence. SETI researchers look for signs of intelligence from outer space. To date they have found no radio signals that exhibit intelligence-signifying patterns. But now imagine they do find such radio signals, such as technosignatures that can reasonably be ascribed only to technologically advanced civilizations. Most people would describe radio signals that fail to confirm SETI as random, those that do confirm it as designed. Yet even if in some ultimate sense intelligence lies behind both signals, there seems an important distinction to be made here between these two types of signals. Accordingly, if existing definitions of intelligent design fail to adequately capture this distinction, then we need a better definition.

4.Matter vs. Information

In distinguishing between the seemingly random and the clearly nonrandom (as in the examples just considered), Aristotle provides a way forward. He does so through two distinctions of his own, the one between matter and information, the other between nature and design. Let’s start with the first distinction. Matter is raw stuff that can take any number of shapes. Information is what gives shape to matter, fixing one shape to the exclusion of others. Both the words matter and information derive from Latin. Matter (from the Latin noun materia) initially referred to the raw timber used in building houses. Later it came to mean any raw stuff or material with the potential to assume different shapes, forms, or arrangements. Aristotle of course wrote in Greek, and his equivalent for matter was hylē (ὕλη). 

Information (from the Latin verb informare) means to give form or shape to something. Aristotle’s Greek equivalent was the noun morphē (μορφή), to denote form, and the verb morphoō (μορφόω), to denote the activity of forming, shaping, or molding, and thus of informing. Unlike passive or inert matter, which needs to be acted upon, information is active. Information acts on matter to give it its form, shape, arrangement, or structure. 

Note that I’m using terms like form, shape, and arrangement interchangeably. Aristotle would distinguish form, in the sense of substantial form or essence, from mere shape or arrangement. It’s enough for my purposes, however, that shape or arrangement be correlated with form in Aristotle’s sense. Thus, for marble to express the form (in Aristotle’s sense) of Michelangelo’s David, it must be precisely shaped or arranged.

The relation between matter, with its potential to assume any possible shapes, and information, with its restriction of possibilities to a narrow range of shapes, is fundamental to our understanding of the world. Certainly, this relation holds for all human artifacts. This is true not only for human artifacts composed of physical stuff (like marble statues of David), but also for human artifacts composed of more abstract stuff (like poetry and mathematics). 

Indeed, the raw material for many human inventions consists not of physical stuff but of abstract stuff like alphabetic characters, musical notes, and numbers. For instance, the raw material for a Shakespearean sonnet consists of the twenty-six letters of the alphabet. Just as a statue of David is only potential in a slab of marble, so a Shakespearean sonnet is only potential in those twenty-six letters. It takes a Michelangelo to actualize the statue of David, and it takes a Shakespeare to arrange those twenty-six letters appropriately so that one of his sonnets emerges.

The relation between matter and information that we are describing here is old and was understood by the ancient Greeks, especially by the Stoics, who understood God as logos, the active principle that brings order to the cosmos. In any case, nothing said so far about the relation between matter and information is especially controversial. The world consists of raw material waiting to be suitably arranged. On the one hand, there’s matter, passive or inert stuff waiting to be arranged. On the other, there’s information, an active principle or agency that does the arranging. This distinction offers a perfectly straightforward and useful way of carving up experience and making sense of the world. Much of our knowledge of the world depends on understanding this relation between matter and information.

5. Nature vs. Design

In the relation between matter and information, the crucial question is how information gets into matter. For Aristotle, there were two ways to get information into matter: by nature and by design. In the examples considered in the last section, we focused on the activity of a designing intelligence (a sculptor or writer) informing or giving shape to certain raw materials (a slab of marble or letters of the alphabet). But designing intelligences are not the only causal powers capable of structuring matter and thereby imparting information. Nature, too, is capable of structuring matter and imparting information.

Consider the difference between raw pieces of wood and an acorn. Raw pieces of wood do not have the power to assemble themselves into a ship. For raw pieces of wood to form a ship requires a designer to draw up a blueprint and then arrange pieces of wood, in line with the blueprint, into a ship. But where is the designer that causes an acorn to form into a full-grown oak tree? There isn’t any. The acorn has the power to transform itself into an oak tree.

Nature and design therefore represent two different ways of producing information. Nature produces information internally. The acorn assumes the form it does through capacities internal to it — the acorn is a seed programmed to produce an oak tree. On the other hand, a ship assumes the form it does through capacities external to it — a designing intelligence imposes a suitable structure on pieces of wood to form a ship. 

Not only did Aristotle know about the distinction between information and matter, but he also knew about the distinction between design and nature. For him, design consists of capacities external to an object. Design brings about form with outside help. On the other hand, nature consists in powers internal to an object. Nature brings about form without outside help. Thus in Book XII of his Metaphysics Aristotle wrote, “Design is a principle of movement in something other than the thing moved; nature is a principle in the thing itself.” In Book II of his Physics Aristotle referred to design as completing “what nature cannot bring to a finish.” 

The Greek word here translated design is technē (τέχνη), from which we get our word technology. The corresponding Latin is ars/artis, from which we get our words artisan and artifact. In translations of Aristotle’s work, the English word most commonly used to translate technē is art in the sense of artifact. Design, art, and technē are thus synonyms. The essential idea behind these terms is that information is imparted to an object from outside the object, and that the material constituting the object, apart from that outside information, does not have the power to assume the form it does. Thus raw pieces of wood do not by themselves have the power to form a ship.

But what if raw pieces of wood did have such a power of self-organization? In Book II of his Physics Aristotle raised and answered that question: “If the ship-building art were in the wood, it would produce the same results by nature.” In other words, if raw pieces of wood had the capacity to form ships, we would say that ships come about by nature. 

The Greek word here translated “nature” is physis (φύσις), from which we get our word physics. The Indo-European root meaning behind physis is growth and development. Nature produces information not by imposing it from outside but by growing or developing informationally rich structures from within. The acorn is emblematic here. Unlike wood that needs to be fashioned by a designer to form a ship, acorns produce oak trees naturally — the acorn simply needs a suitable environment in which to grow.

In light of Aristotle’s distinction between nature and design, the central question that any science of intelligent design needs to resolve when attempting to explain some system in the natural world is therefore this: Is the system self-sufficient in the sense of possessing within itself all the resources needed (nature) to bring about the information-rich structures it exhibits or does it also require some contribution from outside itself (design) to bring about those structures? 

Aristotle claimed that the art of ship-building is not in the wood that constitutes the ship. We’ve seen that the art of sonnet-composing is not in the letters of the alphabet. Likewise, the art of statue-making is not in the stone out of which statues are made. Each of these cases requires a designer. A successful science of intelligent design would demonstrate that the art of building certain information-rich structures in nature (such as biological organisms) is not in the physical stuff that constitutes these structures but requires the input of information from outside the system.

6. The Connection Between Intelligence and Information

Up to now, we’ve only discussed the classical conception of information as developed by Aristotle. The modern conception of information overlaps with Aristotle’s, but it is better adapted to contemporary science and mathematics. Also, it comes without a full-blown metaphysics. The modern conception is drawn from Shannon’s communication theory and subsequent work on the mathematical theory of information. The key idea underlying this conception of information is the narrowing of possibilities. Specifically, the more that possibilities are narrowed down, the greater the information.

For instance, if I tell you I’m on planet earth, I haven’t conveyed any information because you already knew that (let’s leave aside space travel). If I tell you I’m in the United States, I’ve begun to narrow down where I am in the world. If I tell you I’m in Texas, I’ve narrowed down my location further. If I tell you I’m forty miles north of Dallas, I’ve narrowed my location down even further. As I keep narrowing down my location, I’m providing you with more and more information.

Information is therefore always exclusionary: the more possibilities are excluded, the greater the information provided. As philosopher Robert Stalnaker (Inquiry, p. 85) put it: “To learn something, to acquire information, is to rule out possibilities. To understand the information conveyed in a communication is to know what possibilities would be excluded by its truth.” I’m excluding much more of the world when I say I’m in Texas forty miles north of Dallas than when I say I’m merely in the United States. Accordingly, to say I’m in Texas north of Dallas conveys much more information than simply to say I’m in the United States.

The etymology of the word information captures this exclusionary understanding of information. We already discussed its etymology in section 3 on the Aristotelian relation between matter and form. To elaborate on it further, the word information derives from the Latin preposition in, meaning in or into, and the verb formare, meaning to give shape to. Information puts definite shape into something. But that means ruling out other shapes. Information even in its classical conception thus narrows down the shape in question. A completely unformed shmoo, such as Aristotle’s prime matter, is waiting in limbo to receive information. Only by being informed will it exhibit a definite structure.

Aristotle’s conception of information overlaps with but is also separate from the modern conception of information. Aristotle’s conception, as we saw in section 3, is tied to his theory of formal causation, in which information is understood as the cause that gives shape to matter and makes a material object what it is. In Aristotelian thought, the formal cause determines an object’s structure and properties, defining its essence.

For Aristotle, information was thus more than a narrowing of possibilities. Instead it was an intrinsic organizing principle that turns matter into a coherent and purposeful entity. Yet, the modern conception of information, though not wedded to Aristotle’s understanding of formal causation, is nonetheless consistent with it. Aristotelian information, by defining a thing’s essence, makes it this and not that. It is thus inherently exclusionary, which aligns with information in its contemporary sense as the narrowing down of possibilities.

Let’s next turn to intelligence. The fundamental intuition of information as narrowing down possibilities matches neatly with the concept of intelligence. The word intelligence derives from two Latin words: the preposition inter, meaning between, and the verb legere, meaning to choose. Intelligence thus, at its most fundamental, signifies the ability to choose between. But when a choice is made, some possibilities are actualized to the exclusion of others, implying a narrowing of possibilities. And so, an act of intelligence is also an act of information.

If we trace the etymology of intelligent back still further, the l-i-g that appears in it derives from the Indo-European root l-e-g. This root appears in the Greek verb lego, which by New Testament times meant to speak. Its original Indo-European meaning, however, was to lay, and from there to pick up and put together. Still later, it came to mean to choose and arrange words, and from there to speak. The root l-e-g has several variants, appearing as l-o-g in logos and as l-e-c in intellect and select. 

As a side note, this brief etymological study reveals that Darwin’s great coup was to coopt the term selection, previously associated with the conscious choice of purposive agents, and saddle it with the term natural. In the term natural selection, Darwin therefore intended to recover all the benefits of choice as traditionally conceived, and yet without requiring the services of an actual intelligence. Thus to this day we read such claims, as by Francisco Ayala, that Darwin’s greatest discovery was to give us “design without designer,” which Dawkins described as the appearance of design without actual design.

Darwinists, in coopting the term selection, obfuscate the idea of choice. Choice is a directed contingency that actualizes some possibilities to the exclusion of others in order to accomplish an end or purpose. A synonym for the word choice is decision, with the corresponding verb forms being choose and decide. The words decision and decide are likewise from the Latin, combining the preposition de, meaning down from, and the verb caedere, meaning to cut off or kill (compare our English word homicide). 

Decisions, in keeping with this etymology, raise up some possibilities by cutting down, or killing off, others. When you decide to marry one person, you cut off all the other people you might marry (assume the marital relationship is one-to-one). An act of decision is therefore always a narrowing of possibilities. It is an informational act. But given the definition of intelligence as choosing between, it is also an intelligent act.

7. A New Information-Based Definition of Intelligent Design

would otherwise need to be externally inputted. All the necessary information is thus said to reside in the environment (whether front-loaded or self-generated). The environment thus becomes an unlimited source of information that dispenses with all need for design.

I call this maneuver of expanding a system so that it coincides with an informationally plenipotent environment the environmental fallacy. It is a fallacy because 

it illegitimately discounts the integrity of systems, which must be considered on their own terms and which may not be absorbed willy-nilly into larger supersystems simply to avoid the problem of design; and 
it simply presupposes that the environment always has sufficient informational resources to defeat design rather than that the environment always needs its actual internally-generated informational resources accurately assessed to determine whether they are in fact adequate to defeat design and, if not, to allow for a valid inference to design. 
The choice of system to analyze for evidence of design typically adheres to a Goldilocks principle: it needs to be not too big, and not too small, but just right, where just right means that the system allows for an accurate assessment of whether the information output in question is indeed internally generated or the result of externally applied, intelligently sourced information (design). The key types of systems in biology that give evidence of design in this sense are those that exhibit irreducible and specified complexity.

Capacities. A key term in this new definition of intelligent design is capacities. This term refers to the causal powers of systems to produce certain effects or outputs. Systems are able to do certain things but not others. An otherwise functional car with an internal combustion engine but without gas does not have the capacity to drive; with gas, it does. Aristotle understood capacities in terms of his distinction between potentiality and actuality. This distinction fit within his metaphysics for characterizing how entities undergo change. Yet for the sake of our present definition of intelligent design, we only need a conception of capacity that takes causal powers seriously. Aristotle certainly qualifies here, but other approaches do too, such as scientific realism. 

Philosopher of science Nancy Cartwright articulated a conception of capacities that is congenial to our newfound definition of intelligent design. She did this in her book Nature’s Capacities and Their Measurement (Oxford, 1989). There she contended that scientific laws and observed regularities are not merely descriptions of passive events but are underpinned by capacities that can manifest differently depending on context. Cartwright challenged the view that the laws of nature are universally applicable without exception, proposing instead that these laws describe tendencies that are actualized when the relevant capacities are triggered in the appropriate circumstances. For the purposes of this new definition of intelligent design, Cartwright’s view of capacities elucidates causal powers for systems and how systems interact to produce observed phenomena.Chance and Probability. The terms chance and probability do not appear in this definition of intelligent design, but they are there implicitly. Capacities, understood as causal powers, can be described scientifically/mathematically in terms of chance and probability. Thus, to say that a system has the capacity to produce a given output is to say that the system, left to itself, will with high probability produce the output. Alternatively, to say that a system does not have the capacity to produce a given output is to say that the system, except with external input, will with low probability produce the output.

In such a probabilistic approach to capacities, chance then simply describes a system’s probabilistic behavior in producing given outputs. As such, chance says nothing about whether the underlying causal processes are teleological or ateleological. This approach to chance is compatible with Aristotle’s view that all causality is ultimately teleological (chance for him being the incidental collision of independent causal chains, all of which are teleological). But this approach to chance is also compatible with Jacques Monod’s view (in Chance and Necessity) that all causality is ultimately ateleological. Chance, as implied in this new definition of intelligent design, is then simply a non-prejudicial way of describing the probabilistic behavior of a system. 

Intelligent actions are clearly responsible for the chance behavior of some systems. Take, for instance, high school seniors looking to go to college next fall. All the decisions by prospective students to apply to colleges as well as all the decisions by the college admission committees to accept or reject their applications are under full conscious intelligent control. Yet well-defined probability distributions characterize application numbers as well as acceptance and rejection numbers for given schools (Caltech and Harvard currently being the most competitive). 

Note that the use of probabilities to trace causal relationships is well established. Patrick Suppes, Nancy Cartwright, and Judea Pearl have all made compelling arguments for how to get causes from probabilities. The canard “correlation is not causation” is overworked and too often cloaks a self-imposed ignorance. As Judea Pearl convincingly argues in The Book of Why, it is entirely rational to assert that we know the cause of something using probabilistic/statistical arguments that sift both supporting evidence and contrary evidence. 

Probabilistic causality is understood in the first instance through probabilistic dependence. At its most basic, for A to be a cause of B, there must be a probabilistic dependence between them. Specifically, the occurrence of A should increase the probability of B occurring. Formally, P(B∣A) > P(B). This idea can be developed further using causal diagrams, counterfactual analyses, and Bayesian reasoning. But the point to note in connection with our new definition of intelligent design is that the capacities of systems can be modeled probabilistically, as can changes in the capacities of systems through the infusion of novel external information.

Information. Information figures prominently in this definition. It is there not as a metaphor but as a real entity capable of being measured through the tools of the modern mathematical theory of information. Where earlier definitions of intelligent design emphasized intelligence-signifying patterns that are best explained as the product of intelligence, the new definition emphasizes informational outputs that are best explained by prior externally applied informational inputs arising from intelligence, the outputs and inputs being associated with particular systems. The references to patterns and information in the earlier and later definitions of intelligent design are entirely parallel.

The mathematician Norbert Wiener, in his book Cybernetics, remarked that “information is information, not matter or energy.” It’s important to keep this point in mind when working with the new definition of intelligent design. The capacities of many systems are gauged in terms of energy and matter. Earlier, we considered the example of a car with an internal combustion engine that lacked gas in the tank. Such a car lacks the capacity to move itself. Yet, once the tank is filled with gas, it will have the capacity to move. The input here (gas in the tank) that explains the output here (the car being able to move) is, however, not informational but energetic.

The focus in our new definition of intelligent design is squarely on information. Information may require some energetic involvement. For instance, an old-fashioned transistor radio does not have the capacity by itself to play a recorded musical performance. Instead, it requires a signal encoding that performance to be transmitted to the radio. That signal will use energy, but it will be a directed energy that is also a carrier of information. Such inputted information will be best explained as intelligently inputted external information (i.e., design). 

But note, a contemporary digital radio might have a memory unit that contains mp3 files of recorded musical performances. Such a radio, unlike an old-fashioned transistor radio, might therefore have the capacity by itself to play music without external informational input, the music being stored on a memory chip in the radio. This example underscores the need to determine what the actual capacities of systems are whose design stands in question. 

Although in many instances the external application of information by intelligence involves energy, we need to avoid making observed energetic pathways a precondition for intelligently inputted external information. Informational relationships do not require energetic relationships. As Fred Dretske remarked in Knowledge and the Flow of Information (MIT, 1981, p. 26):
                      It may seem as though the transmission of information … is a process that depends on the causal inter-relatedness [think physical causality in terms of energy] of source and receiver. The way one gets a message from s [source] to r [receiver] is by initiating a sequence of events at s that culminates in a corresponding sequence at r. In abstract terms, the message is borne from s to r by a causal process which determines what happens at r in terms of what happens at s. The flow of information may, and in most familiar instances obviously does, depend on underlying causal processes [again, think physical causality and energy]. Nevertheless, the information relationships between s and r must be distinguished from the system of causal relationships [again, think energy] existing between these points.

The key takeaway here for our new definition of intelligent design is that informational relationships take precedence over energetic relationships. We can know, for instance, that a “magic” penny whose coin flips spell out the cure for cancer in Unicode (1 for heads, 0 for tails) is under intelligent external control. Indeed, systems composed of pennies flipped by humans have no capacity to produce meaningful communications, to say nothing of groundbreaking medical advances. The penny here is tapping into a source of information outside itself.

Nor does it matter if no chain of physical causation involving matter and energy can be found, or even exists, to account for the information outputted by the “magic” penny. The design in the “magic” penny’s output is clear. In particular, naturalistic assumptions that try to deny external informational input to the penny for lack of known physical processes capable of accounting for the information need to be rejected. Naturalism, whether in its methodological or metaphysical guise, is not a valid constraint on our new definition of intelligent design.

In conclusion, not everything is designed, but everything could ultimately be the result of intelligence. Both these claims are true. Previous definitions of intelligent design, however, have made it difficult to maintain both these claims without contradiction or confusion. The new definition of intelligent design given in this article allows both these claims to be maintained while at the same time fostering a robust understanding of intelligent design that is scientifically fruitful and philosophically defensible. 

Acknowledgments

The immediate impetus for this article was an unpublished typescript that Jay Richards circulated among his ID colleagues. It was titled “Why We Should Not Concede ‘Blind and Undirected Natural Processes’.” It suggested that the contrast class to design in a design inference should not be regarded as ateleological (i.e., as blind and undirected causes). Jay’s point was that allowing ateleological causes conceded too much ground to naturalists and too little to Aristotelians and Thomists, the latter then being left with a conception of intelligent design incompatible with their metaphysics, and thus with a compelling reason to reject intelligent design. 

I’ve long been aware of this concern. More than twenty years ago, I had even made a partial attempt to render intelligent design compatible with the Aristotelian-Thomist tradition. This I did in December 2001 when I gave an address at a AAAS meeting at Haverford College. My talk was titled “ID as a Theory of Technological Evolution,” and its opening line read “In Book II of the Physics Aristotle remarks, ‘If the ship-building art were in the wood, it would produce the same results by nature’.” A few years later I developed this Aristotelian approach to ID further in a book chapter titled “An Information-Theoretic Design Argument,” which appeared in the Beckwith et al. anthology, To Everyone an Answer: A Case for the Christian Worldview (IVP, 2004). The present article drew heavily from that chapter. 

Spurred by Jay’s typescript and aware that I had, though only partially, addressed his concerns in the past, I might have let the weeks and months slip away before taking up his concerns in earnest. But at the same time that I received Jay’s typescript, I was on my way to São Paulo for the big annual Brazilian intelligent design conference (June 28-30, 2024 — thank you Marcos Eberlin for the invitation!). I wanted to have something new to share with my Brazilian ID colleagues, so I decided to revisit the definition of intelligent design and see how I would need to adjust it to accommodate an Aristotelian-Thomistic metaphysics in which all causality is ultimately teleological. 

After some reflection, it became clear to me that such an accommodation could readily be accomplished while preserving everything of importance in intelligent design. More so, the new definition seemed to strengthen both the scientific and the philosophical underpinnings of intelligent design. I shared a “beta version” of that new definition at the Brazilian ID conference. The present article is the more mature fruit of my reflection. It draws on my two-decades old work on relating ID and Aristotle. In section 5, it also rehearses recent work of mine relating intelligence and information. Regardless of whether this new definition is the last word on defining intelligent design, in my view it represents a significant advance in clarifying intelligent design and strengthening its hand in scientific and philosophical discussions.

Tuesday, 16 July 2024

More on secular occultism.

 

Neanderthals receive their rightful inheritance?

Neanderthals Were a Lot More Like Humans than We Realize


News stories at Phys.org and IFLS are reporting on a new paper in Science which finds more evidence of human-Neanderthal interbreeding. The Editor’s summary of the technical paper notes, “there is now ample evidence for gene flow from Neanderthals to humans and vice versa.” Under the standard biological definition of a “species,” such evidence of interbreeding would indicate that humans and Neanderthals should in fact be considered members of the same species. 

But there’s a lot of baggage in the way of that view. Mainstream paleoanthropologists would not say that we are directly descended from Neanderthals, but they are often promoted as an evolutionary relic representing a primitive stage of human evolution. As a 2020 paper in History and Philosophy of the Life Sciences says: “To most researchers however, the Neanderthal represented an ancient, inferior race of Homo sapiens, an extension into the past of the hierarchy of living human ‘races’, descending from civilized to savages.” But this view is increasingly countered by mainstream scientists who are saying that Neanderthals were just as advanced as contemporary humans. 
             
Most Unkind to Neanderthals

A few months back, Smithsonian Magazine published an article about Neanderthals noting that “we haven’t been very kind to Neanderthals since their remains were first unearthed in the 19th century, often characterizing them as lumbering dimwits or worse.” Yet there is evidence that they used creativity and symbolism
                            Hundreds of intentionally broken stalagmites were found there, arranged into two large, ellipsoid structures and several smaller stacks, during a time when — as researchers confirmed in 2016 — only Neanderthals were roaming Europe. No one knows what these structures were for, but they suggest a tendency toward creativity and perhaps even symbolism

“Rethinking Neanderthals”

A 2023 article titled “Rethinking Neandertals” in Annual Review of Anthropology, previously reviewed by Günter Bechly, notes that Neanderthals used symbolism much like modern humans

The use of symbols is often argued to be a defining feature of H. sapiens. Growing evidence, however, supports the use of symbols by Neandertals in the form of personal ornaments, portable art, and spoken language (see the section titled Language, Cognition, and Brain Development) and possibly cave painting, although the latter remains somewhat controversial. 

According to the paper, there are multiple potential examples of Neanderthals creating cave art:

The paper reports, “New research suggests that Neandertals were responsible for some hand-stencils, painted lines, and dots in multiple caves in Spain.” The cave art is controversial because some argue the dates are too young to be the work of Neanderthals.
At the French cave site La Roche-Cotard, there are 57,000-year-old “digital tracings” or “finger flutings” associated with Neanderthals. However, “The meaning of these tracings currently remains ambiguous … they are not necessarily symbolic in nature.”
At the Einhornhöhle site in Germany there is an engraved phalanx bone of a giant deer that dates to 51,000 years.
A “hashtag” like symbol from Gorham’s cave in Gibraltar, Spain.
A “pecked pebble from the Axlor Rockshelter in Spain.”
It is also argued that there are Neanderthal adornments, including a necklace made of eagle talons found in Croatia, “personal ornaments in the form of perforated, painted, and unpainted large marine bivalves,” and other possible examples of adornments. The Smithsonian Magazine article notes that Neanderthals may have used rope, red ochre pigments, and feathers in adornments.

Peeters and Zwart (2020) summarize this evidence:

[A] mounting body of evidence continues to expand the known repertoire of sophisticated strategies and symbolism practiced by Neanderthals, and sapiens-centrism has come under pressure. The more data we gather on their behaviour, the more similar Neanderthals seem to be to the modern human pattern. Not only dental hygiene, also large-scale cooperative hunting, complex stone tools, language, planning, care for the ill, imagination and symbolic behaviour, was present in Neanderthals. The only traceable advantage of Homo sapiens was that they had started to produce ornaments with little beads and shells, something which seemed absent in Neanderthal culture. Recent research, however, yielded perforated and ochre marine shells and colorants attributed to Neanderthals, suggesting once again that they were cognitively indistinguishable from modern humans. [Internal citations removed.]

Intelligence and Culture 

Going back to the Smithsonian article, it quotes researchers remarking on just how much our understanding of Neanderthal intelligence and culture has changed in recent years:

In addition, the many freshly unearthed or newly analyzed artifacts, some now confidently assigned to Neanderthals thanks to improved methods for dating archaeological finds, make for quite a collection. “If you’d have asked me 20 years ago, I would have said there was quite a big gap in behavior, and Neanderthals would have lacked many of the complex behaviors we find in Homo sapiens,” Stringer says. “Now that gap has narrowed considerably.”

Of course there’s still much we don’t know and the evidence is sparse — due in part to the fact that Neanderthals probably had a relatively small overall population size. But as time goes on, the “gap” between humans and Neanderthals seems to be narrowing, not expanding — and this trend line has profound implications for whether Neanderthals really were the primitive brutes they’re often portrayed as.

Primeval tech as the foundation of human technology

 

Friday, 12 July 2024

Blind cavefish Darwinian evolution or adaptive devolution?

 Blind Cavefish: Evolutionary Icon, or an Example of Preprogrammed Adaptation?


The blind cavefish, Astyanax mexicanus, is often cited as a textbook example of Darwinian evolution. The dramatic transformation from a pigmented surface fish with eyes to a nonpigmented cave-dwelling fish with no eyes is presented as strong evidence for unguided evolution. But scientists with a different perspective have started studying this fish to see if the predictions of Darwinian theory actually hold true. Let’s look at some recent research.

Standard Darwinian theory makes the following claims:

Random mutations changed the fishes’ pigmentation.
Random mutations deactivated the fishes’ eyes.
These changes happened over a long period of time.
Fish without eyes and pigment had a reproductive advantage in the cave environment.

Continuous Environmental Tracking 

However, there is another model that could explain the transformations of the cavefish. This model is called continuous environmental tracking (CET) and it is design-based. The model presupposes that organisms actively track conditions within specific environments and self-adjust based on predesigned adaptation trajectories. Similar to human engineered agile systems, organisms can make internal changes within a range in response to external changes. This model posits:

Genetic changes are directed and repeatable, not random.
Adaptation may be based on epigenetic or gene expression changes.
Adaptation is rapid since it is programmed and not dependent upon the accumulation of random changes.
A sensory mechanism exists to determine when the fish should undergo these changes.
According to CET, adaptive outcomes are expected to be highly regulated, rapid, repeatable, and, in some cases, reversible. Adaptations are anticipated to encompass a spectrum ranging from physiological changes that happen to an individual within a single lifetime to generational changes, which happen more slowly across multiple generations. This model views environmental changes as triggers for organismal sensing rather than as a selective agent.

Similar Adaptations for Different Cave-Dwelling Animals 

Organisms that live in caves are called troglobites (different from the more familiar troglodyte, a human who lives in a cave). They commonly exhibit similar traits to the blind cavefish, including: loss of pigmentation, reduced or absent eyes, enhanced non-visual senses, slower metabolism, specialized reproductive strategies, and extended longevity. This suggests these traits are a non-random, purposefully designed response to the cave environment.

Recent Research on Cavefish

First, cavefish populations are now known “to exhibit repeated, independent evolution for a variety of traits including eye degeneration, pigment loss, increased size and number of taste buds and mechanosensory organs, and shifts in many behavioral traits.” (McGaugh et al. 2014) Are these repeatable, parallel changes an incredible display of natural selection acting on random mutation in the same ways over and over again — i.e., “convergent evolution”? Or is something else going on? Observations of repeatable changes in traits in independent populations are more consistent with a model of preprogrammed adaptability, whereby a designer frontloads genetic variability for different environments at the population level. 

One hypothesis is that there exists distributed information within the population whereby different individuals represent different optimizations for unique environments. A while back, I covered morphological changes in guppies, where more research has been done than with the cavefish. For the guppy, distributed information (i.e., variation — though not necessarily generated by random mutation) at the population level seems to be the favored current hypothesis. Guppy traits change based on baked in genetic variation, which allows changes along certain predesigned trajectories in different environments. Importantly, because the novelty generation is not “happening before our eyes,” I don’t find this evidence convincing for neo-Darwinian theory, which requires that variation arise due to random processes.

Second, developing vision turns out to be a very metabolically expensive process, accounting for as much as 15 percent of the resting metabolic rate early in development. Thus, loss of the visual system reduces the amount of energy necessary for development, which is important in the nutrient restricted cave environment. (Moran, Softley, and Warrant 2015) This means there is a purposeful reason why cavefish lose their eyes. Loss of eyesight appears to be a necessary trade-off given the extreme nutrient deprivation of the cave environment. 

Third, an individual non-pigmented, eyeless cavefish was shown to nearly revert to a pigmented state after exposure to surface-like conditions (daily cycles of high-intensity, full-spectrum light for five months). (Boyle et al. 2023) This suggests color changes are probably not genetic, but more likely epigenetic and can happen to an adult fish over a period of five months. 

Future Research Directions

The next step for researchers is to investigate the molecular mechanisms underlying these changes. Some of this work is already underway. Researchers used an approach called QTL mapping, where homozygous individuals for the trait of interest are crossed to produce an F1 generation. The F1 generation is then interbred or backcrossed to create the F2 or further generations. These generations have a combination of genetic material from the parents. The phenotypic information from these generations is logged and correlated with the genotypic information. This allows researchers to observe which regions of the genome segregate with the traits in question. When this was done for the guppy eye loss trait, QTL mapping implicated 2,408 genes out of a total of 23,042 genes. (McGaugh et al. 2014) Using some other techniques, the researchers lowered their gene list to 30 genes involved in these changes. But, even at 30 genes, it’s hard to imagine how random accumulation of 30 different mutations enabled this phenotypic change in multiple independent populations. Indeed, when many coordinated allele changes are observed as necessary for the development of a phenotype, this data is more consistent with movement of an organism along a predesigned trajectory of adaptation where, given the situation, the fish trades off certain things, like eyes, to function better in its new environment.

Conclusion

Recent research on the blind cavefish has shown that their transformations are reproducible, challenging the idea of random mutation accumulation. Other research has also revealed a significant functional reason for eye loss in cavefish. Additionally, studies have demonstrated that these transformations can occur much faster than previously believed. For example, a single cavefish was observed to reverse pigmentation within five months when exposed to daylight cycles. Recent QTL mapping has identified at least 30 genes involved in eye loss, which means transformations involve multiple genes, suggesting coordination. 

While much work remains to be done, the current research trajectory aligns more with a design-based CET model. A deeper understanding of these processes will provide insights into whether the adaptations observed in the blind cavefish result from Darwinian evolution or preprogrammed adaptive responses. The current evidence, though, is highly suggestive.

References

Boyle, Michael J., Brian Thomas, Jeffery P. Tomkins, and Randy J. Guliuzza. 2023. “Testing the Cavefish Model: An Organism-Focused Theory of Biological Design.” Proceedings of the International Conference on Creationism 9 (1): 17.
McGaugh, Suzanne E., Joshua B. Gross, Bronwen Aken, Maryline Blin, Richard Borowsky, Domitille Chalopin, Hélène Hinaux, et al. 2014. “The Cavefish Genome Reveals Candidate Genes for Eye Loss.” Nature Communications 5 (October): 5307.
Moran, Damian, Rowan Softley, and Eric J. Warrant. 2015. “The Energetic Cost of Vision and the Evolution of Eyeless Mexican Cavefish.” Science Advances 1 (8): e1500363.

Why the big deal re:origins

 

Thursday, 11 July 2024

There is still no place like home?

 

Hydrogen is not the future of energy?

 

The miracle of sunlight.

 

Our sun sheds light on the thumb print of JEHOVAH.

The Wonder of Sunlight: Appreciating the Remarkable Coincidences that Make Life Possible 


In recent articles (herehere and here), I have surveyed examples of properties of the periodic table of elements that appear to be designed to promote the existence of life. There is, however, a myriad of other features of our universe that appear to be delicately tuned for the existence of life — in particular, advanced life. Here, I will offer a summary of another class of such evidence — this one relating to the radiation emitted by the sun.

The Visual Band

The oxygen that we breathe is generated by the process of photosynthesis in the chloroplasts of green plants, a process that is energized by the light from the sun. Remarkably, the radiation emitted by the sun exhibits several remarkable coincidences that make life possible. Many forms of radiation make up the electromagnetic spectrum, each possessing a different wavelength. Within the inconceivably vast range of the electromagnetic spectrum, there exists a small band of radiation that possesses the right energy levels for photochemistry — allowing animals to see and green plants to photosynthesize. This corresponds to the visual band, together with the near ultraviolet and near infrared wavelengths that are closely adjacent to it. This band represents such an incredibly small fraction of the electromagnetic spectrum that it is difficult to do it justice. Concerning the inconceivable vastness of the electromagnetic spectrum, Michael Denton notes, “Some extremely low-frequency radio waves may be a hundred thousand kilometers from crest to crest, while some higher-energy gamma waves may be as little as 10-17 meters across (only a fraction of the diameter of an atomic nucleus). Even within this selected segment of the entire spectrum, the wavelengths vary by an unimaginably large factor of 1025 or 10,000,000,000,000,000,000,000,000.”1 The visual region of the spectrum represents a miniscule fraction of this, lying between wavelengths of 380 and 750 nm in length. Put another way, “the ‘right light’ would be only a few seconds in a time-span one hundred million times longer than the age of the Earth, or a few playing cards in a stack stretching beyond the galaxy of Andromeda — a fraction so small as to be beyond ordinary human comprehension.”2 It is a remarkable coincidence, then, that nearly half of the radiation emitted by the sun lies within this visual region.

The Infrared Region

As to the other half of the sun’s radiant output, this lies primarily in another infinitesimally small region of the spectrum that is adjacent to the visual region, between the wavelengths of 750 to somewhat beyond 2,500 nm. This infrared radiation provides approximately half of the essential heat that is needed to warm the atmosphere of our planet. Denton remarks, “Without it Earth’s entire surface would be a frozen wilderness far colder than the Antarctic. It is thanks to the heat of the sun (and to our atmospheric gases absorbing this heat) that water exists in liquid form on Earth’s surface and the average global atmospheric temperature is maintained well above freezing, in a temperature range which enables the chemistry of life to proceed.”3

Denton concludes, that “this is a genuine coincidence, as the compaction of solar radiation into the visible and near infrared is determined by a completely different set of physical laws from those that dictate which wavelengths are suitable for life and photosynthesis.”4 One might be tempted to ask here whether, given the sheer number of stars in our universe (conservatively estimated at 1024), our sun might be the lucky winner of a cosmic lottery. But, in fact, most stars emit the majority of their radiation in the visible and infrared region.

Penetration of Visual Light

Of course, photosynthesis also requires that the visual light be allowed to penetrate the atmosphere and reach the ground, and that part of the sun’s infrared radiation be absorbed in order to warm our planet to the degree that photosynthesis can take place. It is an exquisitely fortuitous coincidence, then, that Earth’s atmosphere not only allows penetration of almost all of the radiation in the visual region, but also absorbs a significant proportion of the infrared radiation, thereby warming the Earth into the ambient range. In addition, our atmosphere absorbs the dangerous radiation on either side of the visual and near-infrared regions of the spectrum.

Finally, in order for photosynthesis to take place, the visual light must be able to penetrate water, since the light must traverse the water in the cell of any green plant in order to reach the chloroplasts. And, indeed, water — whether in its liquid, gaseous or solid form — is transparent to visual light. If the water vapor in the atmosphere or the liquid water of the cell absorbed the visual band, there could be no photosynthesis, and no aerobic form of life would exist.

Remarkable Coincidences

Photosynthesis is absolutely essential to the existence of advanced life forms. And yet it is easy to imagine a plethora of scenarios where, if our universe were just slightly different, photosynthesis could not take place, and no aerobic forms of life could exist. Since advanced life is not particularly surprising given theism but extremely surprising given naturalism, this evidence tends to confirm the existence of a creator. For a much more detailed discussion of the properties of sunlight that make advanced life possible, I recommend Michael Denton’s book, Children of Light: The Astonishing Properties of Sunlight That Make Us Possible. 

Notes

Michael Denton, Children of Light: The Astonishing Properties of Sunlight That Make Us Possible (Discovery Institute Press, 2018), chapter 2.
Ibid.
Michael Denton, The Miracle of Man: The Fine Tuning of Nature for Human Existence (Discovery Institute Press, 2022), 52.
Ibid.



Wednesday, 10 July 2024

Ever more are daring to deny Darwin?

 Oxford Physiologist Denis Noble: Dissent from Neo-Darwinism Has Passed a “Tipping Point”


Forbes recently ran an article with an attention-grabbing headline: “Evolution May Be Purposeful, and It’s Freaking Scientists Out.” Readers of Evolution News immediately began emailing us about it. On anything relating to evolution versus intelligent design, it used to be that Forbes could be counted on for snarky put-downs of ID, perhaps more so than many another mainstream publication. The times, it seems, are changing. The article by science writer Andréa Morris was based largely on a video interview with retired Oxford physiologist Denis Noble, and it highlights the evidence for “teleonomy” (internal purposiveness) that some scientists have been trying to call attention to:
                      It’s about time. We were wondering when the (often very dramatic) claims made recently in arcane academic texts — such as the essays collected in MIT Press’s 2023 anthology Evolution “On Purpose” — would begin making more of a splash in the popular media. Those essays, and Noble’s own perspective, are not in favor of intelligent design. But you might say they are, if this is not going too far, “ID adjacent.” Many themes will be familiar to those who follow the literature of intelligent design.

But aside from that positive development, there is another point in the article and the accompanying interview that is worth drawing out in detail here: the “very strange psychology,” as Dr. Noble calls it, that has been causing neo-Darwinists to dig their heals in and lash out at anyone who dares question the neo-Darwinian paradigm. 

Noble testifies that some evolutionary biologists have been actively persecuting their fellow scientists who have attempted to deviate from the received consensus. (Gosh, who would have thought?) But according to Noble, the dam has broken and the dissent can no longer be contained.

Persecution? What Persecution? 

Darwin apologists have habitually mocked and denied “claims of persecution” from ID proponents. So pay attention to Noble’s account in the Morris interview of how the situation was back in 2004: 
                                     Morris: So is it true…you mentioned this briefly, that it’s very hard in academia to talk about these ideas, these unorthodox ideas. And you didn’t feel you could actively start being head of this movement until you retired in 2004?

Noble: 2004 is when I retired from being a professor running a big laboratory. I was, therefore, from there on no longer responsible for applying to research organizations for grants to support the salaries of people in my group. So I was no longer in a position in which my own unorthodox views could damage the careers of people working in my laboratory. That’s the reason I only started writing in 2004. And the first publication was The Music of Life, which indeed is very clear about dissenting from the standard Neo-Darwinian synthesis. So all the way from 2006 I’ve been very clear about that. If I had been — as indeed I was for the first ten years or so when I first “came out,” if that’s the right way of putting it, on this this issue — I was denigrated. And with some pretty strong language. If that had damaged my reputation to the point of which it would have been difficult for to get the grant money that would support the salaries of a team, I would, in effect, by my own actions in relation to expressing my views on evolution, have damaged their careers. As simple as that. I couldn’t do that.
                                                     If that sounds bad, think about the fact that Noble wasn’t even denying the reality of Darwinian evolution, or crossing the red line of methodological naturalism. The view was just a critique of current evolutionary theory, from one Darwin-loving naturalist to another. Yet even that was too much to handle. 

Morris then brings up the “vulgar attacks” Noble received from neo-Darwinists after he came out as a skeptic. The background of the video during her question displays a blog post by the inimitable Jerry Coyne titled “Famous physiologist embarrasses himself by claiming that the modern theory of evolution is in tatters.” Noble shares how the 2016 conference at the Royal Society in London reassessing evolutionary theory was almost shut down by neo-Darwinian fundamentalists: 
                                 Noble: In 2016, together with two other scientists and two philosophers, I organized a meeting at the Royal Society in London, the top academy of the United Kingdom, together with also the British Academy, which is the social science side of all of this, and we organized a meeting on “New Trends in Evolutionary Biology.” That meeting triggered a major protest from leaders of the neo-Darwinist synthesis. There was actually a protest to try and stop the meeting happening, in the form of a signed letter to the president of the Royal Society, saying, “Please, disassociate the Society from this meeting.” So, that meeting went ahead. There’s a history to that which we don’t need to go into, but it was quite a difficult history… I would love to find a way of defusing the tension and the standing off, that we experienced, for example, at that Royal Society meeting in 2016. There were just a few neo-Darwinists at the meeting, and it was like a gladiatorial confrontation. And I don’t think that’s necessary.

There’s Persecution, and There’s Persecution… 

Again, Noble is not an ID proponent, or anything totally beyond the pale like that — or even a theist. Morris calls him “neutral on religious matters.” He is in fact a methodological naturalist. And he is a very distinguished scientist — one might even say venerable. He enjoyed a fruitful career at Oxford (where he was Richard Dawkins’s doctoral examiner back in the 1960s). Yet even he was not safe from mudslinging, vitriol, and outright suppression. 

If this has been the situation for highly respected naturalists who merely want to critique contemporary evolutionary theory, without dissenting from Darwinism in general, much less the materialist worldview that underpins the whole endeavor — imagine how difficult it must be for those who go farther, or who are less secure in their careers? 

Molecular biologist and intelligent design proponent Douglas Axe was also at the 2016 conference. This is what he wrote afterwards about the experience:
                                        As important as parenting is, it should be a temporary undertaking. The end result is well worth the effort… when it does come to an end, that is. We’ve all seen regrettable cases where it doesn’t — fully grown adults who retain an unhealthy need for parental approval and aging parents who foster that kind of lingering dependence.

I left the recent Royal Society meeting in London, “New Trends in Evolutionary Biology,” with the distinct impression that I had witnessed a professional version of that unhealthy situation. Old-style neo-Darwinists were there, few in number but with a way of making their presence felt — like overbearing parents presiding over the affairs of their long-grown offspring. Emotional complaints were made against these parent figures during question periods, with spontaneous applause signaling a general mood of protest…

At the meeting I found myself siding with the protestors, but soon afterward I began to wonder whether maybe the “parents” were only partly to blame for the tension. I recalled one participant who, during question time, clearly identified the peculiarity of the protest stance. Addressing one of the speakers who exemplified that stance, he pointed out that this professor and her peers enjoyed good academic positions, complete with all the key ingredients for academic success: tenure, funding, publication records, positions on editorial boards, etc. Why complain, then?…

In fact, scientists who challenge not just the calcified version of evolutionary theory but the larger stream of naturalistic thought that gave birth to it have far more legitimate complaints than any aired at the London meeting. You can’t wade against this larger stream without jeopardizing those key ingredients of academic success. The academy, which has in recent decades become a self-righteous monoculture, vigorously opposes anyone who moves against it.

Maybe this regrettable situation will change, someday
   
Past the Tipping Point

Axe’s “maybe” was maybe less than optimistic, and his “someday” seemed implicitly to lie in the far-distant future. But since 2016 there have already been hints of a sea-change. Intelligent design hypotheses may still be anathema in most circles, but critiques of the received evolutionary paradigm are no longer slapped down. According to Noble:  
                              The interesting thing is this: since that meeting, I am no longer attacked. The silence from the other side is deafening. Has there been any response to the Nature review that I did a few weeks ago with the very provocative title “Genes Are Not the Blueprint for Life”? Nobody’s replied. I look forward to a reply. But there’s been no reply either to the articles that were published in 2017 after that 2016 meeting at the Royal Society. I think there was a tipping point there.
                                        As a result of taboo-breakers like Denis Noble in the early 2000s, today in 2024 there are young scientists who weren’t educated into the strict neo-Darwinian paradigm and feel free to diverge from it. One such scientist is a rising star of origin of life research, Joana Xavier, whom Morris interviewed for the Forbes article along with Noble. Xavier expresses no patience with the neo-Darwinist paradigm, and even less for the gatekeepers who insult and harm the careers of anyone who tries to bring new ideas to the table. She advocates going on the offensive: “We need to shame them,” she says. “I’m sorry, but we do.”

Xavier is an interesting case, and a measure of how some walls seem to be coming down. See here for her comments to Perry Marshall on Stephen Meyer’s Signature in the Cell. The ID tome is “one of the best books I’ve read in terms of really putting the finger on the questions,” and “I actually tell everyone I can, ‘Listen, read that book. Let’s not put intelligent design on a spike and burn it. Let’s understand what they’re saying and engage.’” 

In fact, as a science journalist, Andréa Morris is not without interest herself. In her mentions of ID, she is nuanced, noting that the “reductionist, gene-centric model… forfeits natural phenomena like purpose due to its association with intelligent design and a transcendent, intelligent designer.” In the conversation with Noble, she’s candid: “I don’t believe in a God — I don’t believe in much of anything. But life, and that process, is magical” (at 57:28) Yet a sentence in her article says, “Noble believes that purpose, creativity, and innovation are fundamental to evolution.” Huh. “Purpose, creativity, and innovation” are, word for word, a phrase from Discovery Institute’s one-sentence mission statement.

What, is that some sort of secret handshake? Has she been reading our stuff? Actually, it seems she has. When Noble is talking about the 2016 Royal Society meeting, she illustrates with an image of an article here at Evolution News (at 1:07:30).

Be that as it may, as Xavier says there is no reason to tolerate the self-appointed censors any longer. The tipping point has already been passed, and the old consensus is in retreat. The more scientists take a chance and step outside the neo-Darwinian structure, the more obvious it will be that the structure was a prison, not a foundation. 

And then — maybe — other structures will begin to be questioned as well. 

Noble says: 
                      What do I find now? I meet young people doing research in my university and in other universities who are working within a paradigm that is totally different from the neo-Darwinist paradigm. Can they do so? 

Yes, they can.

Putting away childish things.

 

Tuesday, 9 July 2024

Still seeking straight answers from trinitarians.

 John ch.17:5NKJV"And now, O Father, glorify Me together [b]with Yourself, with the glory which I had with You before the world was."

Did the God and Father of Jesus Christ grant his Son's request?

Yet more on percieving the thumb print of JEHOVAH

 Earth Left “A Path of Tools” to Scientific Discovery


Earth Left “A Path of Tools” to Scientific Discovery

The first few chapters of the wonderful new Discovery Institute Press book, The Farm at the Center of the Universe, by Guillermo Gonzalez and Jonathan Witt, present evidence for intelligent design in biology in the form of a novel, accessible to teens and young adults. Young Isaac, his older cousin Charlie, and their Grandpa discuss molecular machines, irreducible complexity, the fossil record, devolution vs. evolution, cells as remarkable factories that build factories (that build factories …), and the claim that intelligent design is not science. The authors manage to introduce these and other topics into the conversations in a surprisingly natural and accessible way, without sacrificing scientific accuracy, as I noted in my earlier review.

But Gonzalez is an astronomer and perhaps best known for the book The Privileged Planet, written with Jay Richards, and a video by the same name, so the last few chapters find Grandpa and Isaac looking though a telescope more often than a microscope. 

We viewed several segments from the Privileged Planet video during my five-week class on intelligent design last summer. This ten-minute clip was shown to document some of the evidence for the local fine-tuning of conditions on Earth, and this short segment was used to help document evidence for the global fine-tuning of the laws and constants of physics and of the initial conditions of our 


The Anthropic Principle

As discussed in this class, the standard “anthropic principle” objection to the use of these fine-tunings as evidence for design is to assert that there are many planets and many universes with different conditions, and naturally we would inhabit one of the few lucky planets and one of the few lucky universes which are life-permitting, because otherwise we wouldn’t be here to wonder why we are here. This objection is of course more reasonable when applied to the local fine-tuning, not only because there really are many other planets, and no evidence that there are other universes, but also because the range of parameters which could support any conceivable form of life is much narrower in the global case.

Designed for Scientific Discovery

But The Privileged Planet is best known for presenting evidence that not only are the conditions on our planet, and its location, ideal for survival but also for scientific discovery, as discussed in this 15-minute segment. So, I was delighted to see this topic discussed at length in the new book. Grandpa summarizes:
                        What amazes me is that we can see so much of our universe from right here on Earth. Our planet is astonishing. It is incredibly well set up to allow us to live here. And it is incredibly well set up to allow us to discover all manner of things, from tiny cells to the enormous universe. 
                     In  our summer 2023 class we also viewed these clips from Michael Denton’s video Fire Maker which present further evidence that the conditions on Earth are finely tuned for scientific discovery and technological progress, and so are the laws of physics of our universe

Set Up for Science

The fine-tunings for scientific discovery and technological progress are very interesting to me and not just because they defeat the anthropic principle, which only attempts to explain fine-tunings for survival. (We would still be here to wonder without these fine-tunings.) They are so satisfying to me because they show those scientists who insist that nothing could possibly be beyond the reach of their science that they have been able to reach so far with that science in the first place because they have been set up to do so!

At the end of Chapter 8 Isaac concludes “It’s almost like Earth wanted us to do science and invent things. Like someone left a path of tools for us to discover and use.” Gonzalez and Denton have provided us with evidence that supports this remarkable conclusion. One hopes future research will provide even more evidence. 

Many thanks to Gonzalez and Witt for the new book, which is thought-provoking not only for its young target audience, but for all of us. 

And yet more on why the skilled trades remain the smart choice.

 

Zionism interupted?

 

Monday, 8 July 2024

Yet another clash of Titans.

 

On the irreducible complexity of asexual reproduction.

 Herding Chromosomes in the Mitosis Corral


My head is swimming after reading several recent papers on cell division. The multiplicity of molecules involved, and how they get where they need to be and do what they need to do — it is all so astonishing, it beggars description. I wish there were better ways to communicate to laypersons the emotional impact of learning about cell biology without drowning them in jargon like this excerpt from one paper about centrosomes:
                         During interphase, Cep57 forms a complex with Cep63 and Cep152, serving as regulators for centrosome maturation. However, the molecular interplay of Cep57 with these essential scaffolding proteins remains unclear. Here, we demonstrate that Cep57 undergoes liquid–liquid phase separation (LLPS) driven by three critical domains (NTD, CTD, and polybasic LMN). In vitro Cep57 condensates catalyze microtubule nucleation via the LMN motif-mediated tubulin concentration. In cells, the LMN motif is required for centrosomal microtubule aster formation. Moreover, Cep63 restricts Cep57 assembly, expansion, and microtubule polymerization activity…. 
                         Specialists are comfortable with this kind of talk, but we have a world of students being told that cells “emerged” by chance, and “evolved” into humans by blind, purposeless processes over millions of years. The facts above scream “No way!” but how do we tell non-scientists that without burying them in unfamiliar terms? Analogies and pictures can only go so far. I try my best, but simple explanations cannot do justice to the reality. 

For students whose knowledge of mitosis may be limited to light-microscope images of dividing cells, or high-school biology diagrams of the five stages of cell division (interphase, prophase, metaphase, anaphase, telophase —“Ho-hum, will that be on the test?”), let me try to unpack some of the awesome wonders hidden in the above paragraph. It comes from a paper in PNAS by 15 specialists at the Institute of Bioinformatics and Structural Biology in Taiwan’s National Tsing Hua University. Respond with applause at each line:

Some molecules join forces to control other molecules!
Molecules assemble in compartments without a membrane to work in harmony!
Important things won’t happen unless all the parts are together! — and bad things happen if they fail!
Biochemistry is not your normal chemistry, where molecules collide like bumper cars and sometimes join up or break up. This is robotic factory work at a high level. With apologies to Jonathan Maclatchie, who knows the jargon and wrote at a more scholarly level recently (here), and to all the other practicing scientists who talk like this as their daily routine, we have to get the hay down where the cows can eat it. Students become so indoctrinated into materialistic scientism by the time they reach grad school (if they seek a career at that level), it becomes difficult for them to buck the evolutionary consensus once they start learning the real guts of cell biology. One almost must achieve tenure before being able to see without evolutionary blinders on. It happened one day to Michael Behe when he stared at an electron micrograph of a bacterial flagellum, and pondered: “That’s an outboard motor. That’s not a chance assemblage of parts.” His thought started a Revolution.

With hopes of generating some of the awe I felt in my reading, here goes my translation of what this paper revealed. The PhDs can skip the lay talk by clicking the link to the research.

The Mitosis Ranch

Trying to visualize this, I thought of the following analogy. Say a rancher must duplicate the cows in a corral and create two corrals with identical numbers and types of cows. He first has his cowboys yoke identical cows together (yokes representing the centromeres). They line the cows up between the two corrals, head to tail. Then other cowboys rope the cows from opposite directions, lassoing specialized “horns” on the yokes — the kinetochores. It takes a few tries for a cowboy to lasso the horn on his side of the yoke, but each one keeps trying till succeeding. An inspector checks that each yoked pair has one and only one rope on each side, and that the ropes are taut. When he gives a signal (the checkpoint), another cowboy goes down the line and breaks the yokes. The cowboys then pull their cows into the opposite corrals, and a gate closes between them.

The reality in cell division is much, much more intricate, but something like that really happens every time a eukaryotic cell divides. Hundreds of “cowboys” know their roles and know when to go into action. In the cell, though, the “cowboys” are blind and work in the dark. Are we beginning to be astonished yet? There’s much more!

Temporary Meeting Spaces

The PNAS paper reveals new knowledge about how the right molecules come together in the centrosome, a structure critical for pulling chromosomes apart during cell division. In mitosis, there are two centrosomes, one on each side of the cell. Centrosomes are where the mitotic spindle sends out the “ropes” to pull the chromosomes apart into the daughter corrals. Within each centrosome, two marvelously-symmetric centrioles grow perpendicular to each other (see here). They will be the organizing centers for the spindle microtubules. Microtubules will grow out from the centrosome and attach to the chromosomes — one microtubule per sister chromatid — at specialized link points called kinetochores. Like a rope, each microtubule is composed of multiple strands of tubulin, conferring stability to each spindle fiber.
                       Incidentally, how do these distant centrosomes know how many chromosomes there will be and come up with the right number of microtubules? I asked an AI engine that question. It said, 
                     The centrosome doesn’t inherently “know” the number of chromosomes. Instead, the process of microtubule formation is guided by checkpoints in the cell cycle and regulatory proteins. During mitosis, each pair of chromosomes attaches to a kinetochore, which then attaches to the spindle fibers formed from the centrosome. The number of chromosomes determines the number of kinetochores, which in turn helps regulate the number of microtubules needed for proper chromosome separation. It’s a complex and coordinated process involving many proteins and regulatory mechanisms
                             
OK, Well; Point Taken

Back to the “temporary meeting spaces” at centrosomes. The centrosome has no membrane. But when Cep57 (centrosome protein #57 out of dozens known so far) is present, a temporary barrier forms around the required ingredients. This happens by “liquid-lipid phase separation” (LLPS), something like how oil droplets form in water (see my previous article on condensates here). But first, the temporary meeting space (peri-centriolar matrix, or PCM) has to grow by an order of magnitude, from 300 nanometers to micrometers, as all the required ingredients assemble. “Human Cep57,” they say, “is a coiled-coil scaffold at the pericentriolar matrix (PCM), controlling centriole duplication and centrosome maturation for faithful cell division.”
                        Before the onset of mitosis, the centriole undergoes centriole-to-centrosome conversion by recruiting more centrosomal components and expanding the PCM into a micron-sized structure. This expansion leads to an increase in the microtubule nucleation factors, facilitating the rapid assembly of the mitotic spindle during mitosis. It is a central question of how the PCM assembles into a dense compartment enriched with hundreds of different proteins in the human centrosome during PCM expansion. Liquid–liquid phase separation (LLPS) is a compelling concept for elucidating the organizational principles underlying membrane-less organelles. In LLPS systems, multivalent interactions through folded domains or intrinsically disordered regions drive phase separation, resulting in the formation of dynamic biomolecular condensates accessible to cognate clients
                        “Hundreds of different proteins.” Did you catch that? How do the right ones all end up within the membraneless condensate? How could blind evolution ever accomplish such a meet-up? Interestingly, the “intrinsically disordered regions” of some of these proteins, which might have been considered poorly designed by some, play a key role in the phase separation. Notice, too, that the condensate is “dynamic” and “accessible” to the “cognate clients” that belong there, while keeping non-members out.

The authors point out that a deficiency of just this one component, Cep57, results in disorganization of the PCM, and a terrible disease:
               Cep57 mutations are genetically linked to mosaic-variegated aneuploidy (MVA), a rare disease characterized by an abnormal number of chromosomes. The MVA syndrome manifests in various disorders, including skeletal anomalies, microcephaly, and childhood cancers
                                       Cep57 is not the only vital part. “Cep57, Cep63, Cep152, Cep192, CDK5RAP2 (Cep215), and pericentrin are essential scaffolding proteins for PCM integrity.”

How’s Your Awe Meter So Far?

It’s difficult to convey the wonder of these realities without getting bogged down in jargon and detail. For more awe, add these considerations:

All this takes place in spaces too tiny to see with the naked eye. 
Scientists have only discovered most of these intricate details within the lifetimes of many alive today.
The sequence of amino acids in each protein involved is far too improbable to have originated by chance.
Several million cells divide every second in our bodies.
Cells have been dividing since the beginning of life on earth.
The accuracy of cell division is so extraordinarily high, many animals alive today are recognizable from their counterparts in the fossil record.
We are truly privileged to behold details of wonders that were concealed from the eyes of people for thousands of years. If Romans and Babylonians and ancient Chinese were impressed by the sight of a baby at birth, how much more should we be awestruck, dumbfounded, indeed reverent at what biochemists are learning today about realities too small for human eyes? Sure, some observations like evil and suffering are hard to understand, yet even these are better situated for explanation in a design context. As my college biology prof used to say, “The amazing thing is not that we get sick. The amazing thing is that we are ever well,” considering how many things must work correctly each moment of every day. Never become complacent about these realities taking place inside us. We are witnessing intelligent design at a level never comprehended throughout all human history.
                           
                           

Classical liberalism is dead? :Pros and cons.

 

Sunday, 7 July 2024

Engineerless engineering ? :Cosmic edition.

 From Galaxies to Atoms, a Vast Web of Fitness for Life


On a classic episode of ID the Future, host Eric Anderson begins a conversation with biochemist Michael Denton about Denton’s 2020 book The Miracle of the Cell, part of his continuing Privileged Species series exploring nature’s fine tuning for life. New research keeps unveiling ever more ways in which this fine tuning exists, from the cosmos to the atoms of the periodic table, and even to the subatomic level of quantum tunneling. Says Denton: “The miracle of the cell completes the overall fitness paradigm that unites galaxies with atoms in a vast web of fitness for life.”

Denton helped launch the modern intelligent design movement with his seminal 1985 book Evolution: A Theory in Crisis. The book inspired a number of well-known ID scholars, including Michael Behe, Stephen Meyer, and William Dembski, to speak out on the limits of Darwinian processes and the evidence for intelligent design. Denton followed up in 1998 with Nature’s Destiny, a step-by-step argument for human inevitability and human uniqueness in the universe.

This is Part 1 of a two-part conversation. Find and listen to the podcast here. Look for Part 2 next!

Sons of God.

 

Friday, 5 July 2024

The multiverse as God substitute.

 

Another Friday,another nightmare for Darwinists, courtesy the fossil record.


 Fossil Friday: Time Wanderers Debunk Popular Scenario of Mammalian Evolution


This Fossil Friday features the holotype of the shrew-sized fossil vertebrate Chronoperates paradoxus from the Early Tertiary (Late Paleocene) Paskapoo Formation of Alberta in Canada. I still remember very vividly, when I was a graduate student at the University of Tübingen the sensational discovery of this fossil hit the news in 1992 (Hecht 1992, Novacek 1992), which we discussed in the vertebrate phylogeny course of the late great Dr. Gerhard Mickoleit. What was so special about this find?

In their original description of the tiny fossil jaw fragment, Fox et al. (1992a) documented several unique features of the lower jaw and its dentition that are exclusively characteristic of primitive mammal-like reptiles of the order Therapsida and the suborder Cynodontia (both taxa were later redefined in cladistic classification to include true mammals). Therapsids first appeared in the Early Permian 280 million years ago and were believed to have become extinct in the Middle Jurassic about 160 million years ago. Therefore, this Paleocene fossil would have been 100 million years younger than the previous youngest fossil record of therapsids and double their stratigraphic range, implying a long ghost lineage. This is why the relict genus was named Chronoperates, which means time wanderer in Greek.

Immediately Contested

The determination of Chronoperates as a therapsid was immediately contested by vertebrate paleontologist Hans-Dieter Sues (2006), but defended by the original authors (Fox et al. 1992b), who emphasized that Sues had not presented any synapomorphies in support of his alternative mammalian determination, and also had never studied the actual specimen. Indeed, the main argument by Sues was a very vague appeal to the only subtle differences between the teeth of Chronoperates and those of Cretaceous symmetrodont mammals (also see Novacek 1992), which was a possibility that was actually already addressed and refuted in the original description, as well as the false and misleading claim that the therapsid features could rather be artefacts of preservation. Nevertheless, some other scientists also doubted a therapsid affinity but explicitly admitted that they “don’t have any alternative to offer” (Hopson quoted in Hecht 1992). McKenna & Bell (1997: 43) likewise did not believe in the non-mammalian cynodont identity, but rather suggested a “dubious” position, possibly among basal holotherians, which are Triassic and Jurassic stem mammals (see Naish 2006b). Naish (2006b) also mentioned that “Meng et al. (2003) noted that the medial dentary scar seen in Chronoperates might not house post-dentary bones, as Fox et al. proposed, but instead a persisting Meckel’s cartilage. Now, if Chronoperates did possess a Meckel’s cartilage, this would be a first for a post-Mesozoic synapsid, and would further support ideas that Chronoperates is actually a late-surviving basal mammal” as suggested by McKenna & Bell.

Until today the therapsid affinity of Chronoperates is generally considered to be debunked, and Chronoperates is listed as potential symmetrodont mammal in Wikipedia, all based on a single one-page article with some unsubstantiated sweeping comments by a scientist, who never studied the actual fossil himself. Nobody ever bothered to look at this sensational fossil again. The only reason why the skeptical view still prevailed, is that the fossil would be very much out-of-place and contradicting the expectations from the mainstream Darwinian scenario of mammal origins. So much about unbiased scientific quest for truth. If some facts don’t fit the narrative, just deny them and sweep them under the rug.

Other Out-of-Place Fossils

In his two-part blog post, vertebrate paleontologist Darren Naish (2006a, 2006b) also discussed some other out-of-place fossils of mammal-like reptiles (non-mammalia therapsids):

In 1915 several fragmentary fossil bones were discovered in Early Cretaceous sediments from Queensland in Australia, which exhibited remarkable similarities with the extinct Dicynodontia, a clade of Permian and Triassic herbivore non-mammalian therapsids that lacked any fossil record beyond the Triassic-Jurassic boundary. The surprising dicynodont affinity was later indeed strongly confirmed by Thulborn & Turner (2003), who meticulously demonstrated that neither the dating nor the phylogenetic position can be reasonably disputed. This is a big deal, because this fossil record of dicynodonts is again “something like 100 million years younger than the previously known youngest members of the group” (Naish 2006a). This arguably proves that a similar ghost lineage for Chronoperates would be well within the realm of possibility and no reason to reject its determination as therapsid. So, it is hardly surprising that just a few years later, Agnolin et al. (2010) claimed that the Australian bones may rather have belonged to an extinct group of crocodyliforms called Baurusuchia, just because of unspecified striking similarities without any further explanation or documentation, while Knutsen & Oerlemans (2020) disputed the dating (instead suggesting a Plio-Pleistocene age) and the determination all-together, but this time the bones were claimed to belong to a diprotodontid marsupial and suddenly found “no features diagnostic of dicynodonts.” Thulborn & Turner (2003) on the other hand had unequivocally stated that this fossil “clearly does not represent … any of the big marsupials such as Diprotodon … The only identification supported by positive evidence, in the form of demonstrable similarities and diagnostic features, is ‘dicynodont.’” As happens all too often, apparently everything goes by the board when the goal is to make inconvenient fossils fit the preferred story. It is sobering to realize how dubious and sloppy evolutionary biology actually works when you look a bit closer behind the pompous facade of the so-called “undeniable scientific facts.”

Simpson (1928) described the docodont Peraiocynodon inexpectatus from the Early Cretaceous Purbeck Limestone of England, which was confirmed as a docodont by Averianov (2004). The species name inexpectatus of course alludes to the unexpected young age of this fossil, because Docodonta are Mesozoic mammaliaforms that abruptly appeared in the fossil record of the Middle Jurassic and were believed to have gone extinct in the Late Jurassic. Maschenko et al. (2002) described with Sibirotherium another late surviving docodont from the Early Cretaceous of West Siberia, later complemented by another genus Khorotherium from the Early Cretaceous of Yakutia as the youngest known docodont (Averianov et al. 2018). The previously described assumed docodont Reigitherium from the Late Cretaceous of Patagonia (Pascual et al. 2000), was later recognized as a real mammal of the dryolestoid order Meridiolestida (Rougier et al. 2003, 2011, Harper et al. 2018), which may well be correct.

Finally, there is the unnamed Saint Bathans mammal from the Early Miocene (18.7-15.9 mya) of New Zealand (Worthy et al. 2006), which is known from three fragmentary specimens and seems to represent a basal mammaliaform outside the crown group clade of monotremes, marsupial and placental mammals, and even basal of the extinct multituberculate branch. It is technically not a non-mammalian therapsid but also not a crown group mammal. Therefore, the discovery of such a primitive stem mammal in Miocene layers was highly unexpected and surprising (Naish 2006b).

Survivors or Relics

All these late survivors or relicts (sometimes called Lazarus taxa) are not just some weird scientific curiosities, but actually demonstrate a general problem with the common evolutionary narrative about mammalian origins, which claims that mammal-like reptiles disappeared because they were outcompeted by the modern true mammals. Mammal-like reptiles like pelycosaurs and therapsids ruled the Permian and Triassic periods, and some therapsids like the herbivorous Tritylodontidae existed till the Jurassic. All these alleged early ancestors of mammals were thought to have been wiped out by the more modern real mammals (Mammaliaformes), which originated in the Triassic but did not diversify before the Late Jurassic. This widely accepted replacement theory was overturned for good, when more than 250 tritylodontid teeth were discovered in Early Cretaceous layers of Japan (Matsuoka et al. 2016), proving that tritylodontids survived 30 million years longer than previously believed. Tritylodontids demonstrably coexisted for millions of years with more modern mammaliaforms that partly even occupied the same herbivorous niches. The crude Darwinist presumption of more advanced descendants outcompeting their primitive ancestors turned out to be wrong once again. The take-home message is this: Darwinian stories are exactly that — just fancy stories rooted in wishful thinking rather than in hard science.

References

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Averianov AO 2004. Interpretation of the Early Cretaceous mammal Peraiocynodon (Docodonta) and taxonomy of some British Mesozoic docodonts. Russian Journal of Theriology 3(1), 1–4. https://zmmu.msu.ru/rjt/articles/ther3_1_01_04_Averianov.pdf
Averianov A, Martin T, Lopatin A, Skutschas P, Schellhorn R, Kolosov P & Vitenko D 2018. A high-latitude fauna of mid-Mesozoic mammals from Yakutia, Russia. PLoS ONE 13(7):e0199983, 1–17. DOI: https://doi.org/10.1371/journal.pone.0199983
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Naish D 2006b. ‘Time wandering’ cynodonts and docodonts that (allegedly) didn’t die: late-surviving synapsids II. Tetrapod Zoology May 25, 2006. http://darrennaish.blogspot.com/2006/05/time-wandering-cynodonts-and-docodonts.html
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Rougier G, Novacek MJ, Ortiz-Jaureguizar E, Pol D & Puerta P 2003. Reinterpretation of Reigitherium bunodontum as a Reigitheriidae dryolestoid and the interrelationships of the South American dryolestoids. Journal of Vertebrate Paleontology 23(Supp. 3), 90A. DOI: https://doi.org/10.1080/02724634.2003.10010538
Rougier GW, Apesteguía S & Gaetano LC 2011. Highly specialized mammalian skulls from the Late Cretaceous of South America. Nature 479 (7371), 98–102. DOI: https://doi.org/10.1038/nature10591
Simpson GG 1928. A Catalogue of the Mesozoic Mammalia in the Geological Department of the British Museum. British Museum (Natural History), London (UK), 215 pp.
Sues H-D 1992. No Palaeocene ‘mammal-like reptile’. Nature 359, 278. DOI: https://doi.org/10.1038/359278a0
Thulborn T & Turner S 2003. The last dicynodont: an Australian Cretaceous relict. Proceedings of the Royal Society of London B 270(1518), 985–993. DOI: https://doi.org/10.1098/rspb.2002.2296
Worthy TH, Tennyson AJD, Archer M, Musser AM, Hand SJ, Jones C, Douglas BJ, McNamara JA & Beck RMD 2006. Miocene mammal reveals a Mesozoic ghost lineage on insular New Zealand, southwest Pacific. PNAS 103(51), 19419–19423. DOI: https://doi.org/10.1073/pnas.0605684103