Yet more explaining (away?) of discontinuity in the history of life.

Still More Excuses for Cambrian Non-Evolution
Evolution News | @DiscoveryCSC

Physical Foundations of Biological Complexity

A non-typical, out-of-the-box thinker, Eugene Koonin is often fun to read, at least compared to the typical Darwin apologist. With two co-authors in  PNAS last month, the evolutionary biologist set out to explore “The Foundations of Biological Complexity.” His topic is broader than the Cambrian explosion, but entails it. 

Living organisms are characterized by a degree of hierarchical complexity that appears to be inaccessible to even the most complex inanimate objects. Routes and patterns of the evolution of complexity are poorly understood. We propose a general conceptual framework for emergence of complexity through competing interactions and frustrated states similar to those that yield patterns in striped glasses and cause self-organized criticality. We show that biological evolution is replete with competing interactions and frustration that, in particular, drive major transitions in evolution. The key distinction between biological and nonbiological systems seems to be the existence of long-term digital memory and phenotype-to-genotype feedback in living matter.

Design advocates may wish to look more deeply into Koonin’s paper, but after you simplify the jargon and restate the basic ideas, he seems to be saying that biological matter is just a special case of non-biological matter with memory. As for “competing interactions and frustration,” is that like squeezing long balloons so that a dog shape pops out? Surely there must be more to the “emergence of complexity” than this! Even if the long balloon can remember what happened in the previous “frustrated” state, you won’t get trilobites this way.

Biological systems reach hierarchical complexity that has no counterpart outside the realm of biology. Undoubtedly, biological entities obey the fundamental physical laws. Can today’s physics provide an explanatory framework for understanding the evolution of biological complexity? We argue that the physical foundation for understanding the origin and evolution of complexity can be gleaned at the interface between the theory of frustrated states resulting in pattern formation in glass-like media and the theory of self-organized criticality (SOC) .… We unify these two faces of SOC by showing that emergence of complex features in biological evolution typically, if not always, is triggered by frustration that is caused by competing interactions at different organizational levels. Such competing interactions lead to SOC, which represents the optimal conditions for the emergence of complexity. Competing interactions and frustrated states permeate biology at all organizational levels and are tightly linked to the ubiquitous competition for limiting resources. This perspective extends from the comparatively simple phenomena occurring in glasses to large-scale events of biological evolution, such as major evolutionary transitions. Frustration caused by competing interactions in multidimensional systems could be the general driving force behind the emergence of complexity, within and beyond the domain of biology.

“Competition for limiting resources” sounds a bit Malthusian. But does competition really “drive” innovation like a physical “force”? Extinction seems an easier way out. As for SOC, If biological systems are “nothing but” physical systems, we should see trilobites emerge from molten metal as it hardens, or from the Mandelbrot set. Koonin and his friends admit that the kind of self-organizing and fractal patterns which can emerge in non-biological systems don’t qualify:

However, contrary to some general statements, there is more to the evolution of complexity than SOC. Importantly, SOC does not lead to hierarchical complexity: Fractal patterns produced by SOC are not genuinely complex because, by definition, they appear the same at all spatial and/or temporal scales.

Try as he might to make biology a special case of physics, Koonin cannot get hierarchical complexity (the “functional wholes” Doug Axe writes about in Undeniable), by the mere operation of fundamental physical laws. The missing ingredient is information from an intelligent source. Only that is able to use physical laws to organize matter for functional ends. Specialists may wish to investigate other ideas in the paper for their philosophical entertainment value. In the final analysis, though, Koonin and friends confess, “the level of complexity and elaboration characteristic of living things is unmatched by anything outside biology.” So what has this paper contributed to understanding the Cambrian explosion and all the other explosions(Bechly, “which are the rule”) from the origin of life till now? Nothing. Frustrating, indeed.

What Does It Mean to Be an Animal?

One last idea comes from a “technology feature” in the Nature journal Lab Animal.In her essay “What is a lab animal,” Ellen P. Neff complains that researchers tend to have a “bilaterian-biased” perspective of animal life. She recommends that biologists consider three very different phyla to answer her opening question, “What does it mean to be an animal?” Those phyla would be:

 placozoans, ctenophores, and sponges. Each of them dates back to the Cambrian.

  Neff describes many of the peculiarities of these creatures that make them just as interesting as lab rats. You can’t model animals without covering these very distinct groups, she argues, even though they share many of the same genes of the familiar model animals.

    The communities studying these three phyla are small and no sponge, ctenophore, or placozoan may ever dethrone the traditional models like the mouse, but putting the time and effort into working with less traditional animals has its place. “We need to keep that breadth, and it’s sort of jolting,” says Leys. “It helps people understand things that are not always typical in mammalian systems.”

    The three phyla each have living representatives, which she says have “continued to evolve solutions to life on Earth.” That diversification of these body plans has continued, nobody disputes. The question Neff avoids is how they came to be in the first place.

If we could interrupt Darwinians every time they say a biological phenomenon “has evolved,” and ask how it evolved, debate about the Cambrian explosion would consist of a series of long pauses. But since journals refuse to give voice to Darwin skeptics due to the arbitrary rule of methodological naturalism, the Darwinians continue to get away with non-answers to the origin of hierarchical complexity. Meanwhile, the trilobites look up silently from their Burgess Shale rock slabs, with sad eyes, asking, “Where did I come from?”

File under "Well said." LX

Proverbs10:3 ASV "Jehovah will not suffer the soul of the righteous to famish; But he thrusteth away the desire of the wicked."

When lady Justice's scales malfunction.

Researchers: More than 2,000 false convictions in past 23 years

NBC News:

In 1984, two North Carolina girls, age 4 and 6, were molested. They told police their abuser was Sylvester Smith, who was dating the mother of one of the girls, and he went to prison for the crime. 

Twenty years later, the victims recanted, saying their grandmother told them to blame Smith, and his conviction was overturned.

But the person they say who really molested them -- their cousin, who was nine at the time -- could not be prosecuted because he was under age at the time of the alleged crime. He is, however, serving a life sentence for another crime he committed in the meantime: murder.



Smith's case illustrates the fallout from false convictions: He lost roughly 20 years of his life to prison, while the alleged perpetrator was free to commit other crimes.

Smith's discarded conviction is one of nearly 900 such cases filed in the National Registry of Exonerations, a database of prisoners exonerated in the U.S. of serious crimes since 1989, that was made public on Monday. To qualify as an "exoneree," an individual must have been convicted and later relieved of all the legal consequences.

In compiling the database, researchers became aware of more than 1,100 other cases in which convictions were overturned due to 13 separate police corruption scandals, most of which involved the planting of drugs or guns on innocent defendants. Those exonerations are not included in the registry. 
  ExonerationRegistry.org is the largest database of its kind ever assembled, according to its creators from the University of Michigan Law School and the Center on Wrongful Convictions at Northwestern University School of Law. Nonetheless, researchers are not able to say what percentage of convictions in the U.S. are false, in part because it can take so long for new evidence to come to light. There are currently about 2.5 million people in prison in the United States.

The earliest cases in the database date back to 1989, when DNA evidence freed its first two prisoners.

"We can figure that as sort of the modern period in exonerations because DNA was a big game-changer," said University of Michigan Law Professor Samuel Gross, one of the registry's creators. "It provided a scientific instrument for reviewing cases and providing a different type of evidence about those cases because the technology didn't exist."

But DNA doesn't actually account for the majority of the exonerations in the database, after an initial wave in the early 1990s, he said.

"DNA is a fairly narrow-gauged tool. It only fits particular type of crimes," Gross said, noting that only 37 percent of the people in the database were cleared with the help of DNA evidence. "In the public mind, exoneration became identified with DNA... Most of these cases -- DNA and non-DNA -- everybody agrees there was a mistake; frequently because the criminal was caught, often because we agree there was no crime at all."

Gross co-authored a report on the database that pulls together statistics on exonerations from January 1989 through February 2012. While the database is constantly updated and new exonerations are being added all the time, the report focuses on the 873 individuals whose cases had been filed before March. 

Gross and his report co-author, University of Michigan law school graduate Michael Shaffer, discovered correlations in the types of crimes and reasons for wrongful convictions.

Fabricated crimes. False convictions in child sex abuse cases were usually due to fabricated crimes; sometimes a divorced parent told a child to make up lies about an ex-spouse abusing them, or police or a therapist convinced a child to say something that wasn't true.
Eyewitness mistakes. In adult rape cases, for example, false convictions were typically based on eyewitness mistakes, "more often than not, mistakes by white victims falsely identifying black defendants," the report said.
Misconduct by authorities. For homicides, misconduct by authorities was the second-biggest cause of false convictions, just behind false eyewitness accounts.
Eyewitnesses are crucial to a trial, experts say, and their mistakes, whether intentional or not, can have a huge impact.

"The bulk of the evidence that is presented in trials in human testimony. Almost all of the time, energy, and effort is spent hearing people's statement in what occurred at a different place and a different time," Dan Simon, a professor of law and psychology at USC, said. "The bottom line is, people are often inaccurate."

Asking an eyewitness to identify a suspect from a lineup demonstrates this.

"There's a nice study that shows slight variations in the way the lineup is conducted can result in swings of accuracy from as low as 14 percent to as high as 86 percent," Simon said.
   Confessing to a crime you didn't commit
Another factor in false convictions is what happens in the interrogation room. The report tracks 135 people who falsely confessed to a crime, and went to prison as a result.

"Why would anyone ever admit doing a terrible crime they didn't do?" Gross said. "The first thing to note is the risk false confessions goes up rapidly when the suspects are either juveniles or mentally handicapped or both."

In other cases in the database, a comment made to authorities was misinterpreted as a confession, or police pressure led to the false confession.

How effective are police lineups? Take our test

"Some people are being interrogated at a time of extreme mental anguish and distress," Gross said. "There was a very depressing case from Lake County, Illinois. He confessed to raping and murdering his young daughter, 8 or 9 years old, and a friend of hers. But consider the circumstances. He was being interrogated by the police, probably for 10 or 20 hours, within a day or two of when his daughter was kidnapped, raped and murdered and then they turned on him."

Exonerees can be found in all parts of the country, but most were concentrated in Illinois, New York, Texas, and California. 

93 percent are men, 7 percent women;
Nearly 50 percent are black, 38 percent white, 11 percent Hispanic and 2 percent Native American or Asian;
48 percent had been falsely convicted of homicides, 35 percent of sexual assaults (23 percent adult, 12 percent child), five percent robberies, five percent other violent crimes, and seven percent drug, white-collar and other non-violent crimes.
As a group, they spent more than 10,000 years in prison, an average of more than 11 years each.

Free from bars, but not from stigma
Smith, the man from North Carolina who was accused of molestation, maintained his innocence all along. He was only freed after one of the victims spoke to the other and decided to come forward in 2004.


Chris Seward/ The News & Observer (Raleigh), file

Sylvester Smith's wife Phillis Smith, right, reacts as Judge William Gore announced that Smith would be granted a new trial after two witnesses recanted their testimony in Bolivia, N.C., Nov. 5, 2004.

"They said they were more or less encouraged to accuse Mr. Smith, but it took a number of years and a great passage of time," Smith's lawyer, Roy Trest, said. "Obviously, he was extremely elated after all the years he had spent in prison."

Smith asked for a pardon from the governor, but was denied.

Now 61 and in poor health, he lives with his wife -- who he was married to but separated from before he went to prison -- in Brunswick County, N.C., and has established a friendship with one of the victims who accused him, his lawyer said.

Not all exonerees who leave prison are able to reintegrate back into society like Smith, despite a court proclaiming them innocent.

"Even if people honestly believe that this person was truly innocent, there is a certain stigma that comes with the mere fact that you were in prison," Simon said. "You were with bad people, you were antisocial, you had to live in the jungle-like societies you often find in prisons."

Sometimes, families break up when a defendant goes to prison. Finding a job after release can be hard too.

"Often times, the state is really unhelpful. There is no automatic method to get your criminal record expunged," Simon said. "And they have huge holes in their results, and often times they lack the skills that would help you get a job. Everyone else was studying while you were stuck in a cell."

Simon believes the registry will help reform the justice system because it helps experts analyze the causes of false convictions. The creators are still adding cases to ExonerationRegistry.org. Gross said he hopes exonerees will contact his team if they had their convictions overturned and don't see their story in the database. 
  

Discontinuity in the history of life explained (away?) once again.

Ignoring Other Research, New Study Explains (Away) the Origin of New Body Plans
Günter Bechly

Every now and then a new scientific paper takes on a particularly daunting challenge. The challenge is to explain the discontinuous origin of new body plans in the history of life on earth, for example, as observed in the sudden appearance of the animal phyla during the Cambrian explosion about 530 million years ago. Most of these attempts fail miserably. That is because the proposed causes are clearly not apt to generate new biologic complexity and diversity. Notorious examples are the slime theory and the oxygen and cancer theories that have already been discussed at Evolution News.

A New Pseudo-Explanation

Recently, a team of British paleontologists added a new pseudo-explanation. Deline et al. (2018) studied the presence and absence of thousands of features from all living animal groups, which allowed them “to create a shape space for animal body plans, quantifying their similarities and differences” (Donoghue in the press release by the  University of Bristol 2018) The authors claim: “Our results show that fundamental evolutionary change was not limited to an early burst of evolutionary experimentation. Animal designs have continued to evolve to the present day — not gradually as Darwin predicted — but in fits and starts, episodically through their evolutionary history.”

This is interesting indeed, because it exactly confirms my own argument (Bechly & Meyer 2017) that the history of life is a series of numerous discontinuous abrupt origins (“explosions”), contradicting the fundamental prediction of gradualism implied by Darwin’s theory of evolution through random variation and natural selection. As Richard Dawkins (2009) emphasized in his bestselling book The Greatest Show on Earth: “Evolution not only is a gradual process as a matter of fact; it has to be gradual if it is to do any explanatory work.” Darwin’s theory does not pass this empirical test of its predictions. So far so good (or rather so bad for neo-Darwinism). We already knew this.

Furthermore, the paper states: 

Our results challenge the view that maximum variation was achieved early in animal evolutionary history by nonuniformitarian mechanisms. Rather, they are compatible with the view that the capacity for fundamental innovation is not limited to the early evolutionary history of clades…. Our mapping of metazoan morphospace has shown that, even though some animal phyla demonstrate maximal initial disparity, others, notably chordates, arthropods, annelids, and mollusks, have progressively expanded on the limits of phylum and kingdom level morphospace post-Cambrian.

Thus post-Cambrian evolution has seen body plan innovation, which is hardly controversial. After all, insects, tetrapods, birds, mammals, and other body plans did not exist 530 million years ago. But this point does not negate at all the crucial fact that extreme biological innovation occurred rapidly in the Cambrian. Nor does it negate the fact that when later body plan innovations appear, they typically also do so abruptly.

However, Deline et al. also claim, “The ‘clumpiness’ of morphospace occupation by living clades is a consequence of the extinction of phylogenetic intermediates, indicating that the original distribution of morphologies was more homogeneous.” In a previous article at Evolution News (Anonymous 2018b) this ad hoc hypothesis has already been criticized, because it unashamedly maintains that exactly where the hypothetical intermediates are proposed to have existed, they remain forever inaccessible. How convenient!

An Even More Fundamental Problem

But there is an even more fundamental problem with this new study. As one of their major results, the authors claim that the origin of new body plans did not require the origin of new DNA code for new proteins. Instead, tweaking gene regulatory networks has been a main causal factor in the origin of metazoan disparity. Strangely, the authors completely ignore the work of Paps and Holland (2018) and do not even cite this important paper in their references section. Deline et al. submitted their manuscript on June 26, but the Paps & Holland study was published on April 30, allowing plenty of time to incorporate, or at least to mention those new results, unless these were too inconvenient truths that would have blown their own paper out of the water. 

Paps and Holland reconstructed the ancestral genetic nodes at which different types of animals diverged, and showed that those nodes involved major genetic and genomic innovations compared to other nodes. This clearly refutes one of the major conclusions of Deline et al.’s paper! Thus, Deline et al. are following in the path of Charles Marshall’s failed attempt to downplay the degree of genetic innovation that was necessary in the Cambrian (see Anonymous 2018a). The omission of Paps and Holland gets a truly bizarre twist in the review of Deline et al.’s work by Paps (2018) himself, who praises the new paper to the skies, but does not bother to mention the omission of his own contradicting study. This is a bit fishy.

A Classical Fallacy

The paper also seems to commit the classical fallacy of confusing correlation with causation. It states: “Causal hypotheses of morphologic expansion include time since origination, increases in genome size, protein repertoire, gene family expansion, and gene regulation.” The authors find a correlation with genome size and microRNA repertoire, but no correlation with protein domain diversity, and they conclude that gene regulation was more influential in shaping metazoan disparity. This of course overlooks that the lack of a general correlation between increasing morphological disparity and protein domain diversity does not imply that novel proteins do not play a crucial role in the origin of new body plans, as suggested by Paps and Holland. Apart from that, like all cladistic studies, this paper suffers from the general problem of biased and more or less arbitrary character selection and delimitation (Bechly 2000) in its data for measuring the disparity morphospace in the first place.

Last but not least, the new paper of course does absolutely nothing to explain how on earth random changes in gene regulatory networks could ever produce highly integrated and complex novel organ systems such as arthropod compound eyes, bird feathers, or the countercurrent heat exchange cooling system for the testes in whales. As a causal process, it is as unlikely to generate the phenomenon in question as oxygen levels or cancer.

In short: While certainly an interesting study, Deline et al. delivers just another failed attempt at an explanation for the origin of new body plans and biological disparity. Next?

Literature:

• Anonymous 2018a. “Groundbreaking Paper Shows Thousands of New Genes Needed for the Origin of Animals.” Evolution News June 7, 2018.
• Anonymous 2018b. “A Beautiful, Wonderful Solution to the Cambrian Puzzle?” Evolution News, September 7, 2018.
• Bechly G 2000. “Mainstream Cladistics versus Hennigian Phylogenetic Systematics.” Stuttgarter Beiträge zur Naturkunde Serie A 613, 1–11. (PDF)
• Bechly G, Meyer S 2017. “The Fossil Record and Universal Common Ancestry.” Chapter 10 in Moreland JP et al. (eds). Theistic Evolution: A Scientific, Philosophical, and Theological Critique. Crossway, Wheaton, pp. 331–362.
• Deline B, Greenwood JM, Clark JW, Puttick MN, Peterson KJ, Donoghue PCJ 2018. “Evolution of metazoan morphological disparity.” PNAS preprint, September 4, 2018.
• Paps J 2018. “How animals went from single cells to over 30 different body types.” The Conversation, September 4, 2018.
• Paps J, Holland PWH 2018. “Reconstruction of the ancestral metazoan genome reveals an increase in genomic novelty.” Nature Communications 9:1730. (PDF)
• University of Bristol 2018. “Evolutionary origins of animal biodiversity.” Science Daily, September 3, 2018.

The undead continue to prowl Darwinism's badlands.

Listen: Dead Peppered Moths Can’t Evolve
Evolution News | @DiscoveryCSC

On an episode of ID the Future, biologist Jonathan Wells, author of Icons of Evolution: Science or Myth? Why Much of What We Teach About Evolution is Wrong and Zombie Science: More Icons of Evolution, debunks a study purporting to breathe fresh life into an old and throughly discredited icon of evolution, the peppered moth. Wells also tells how this icon of a moth “evolving” from light to dark lives on in current textbooks, in the same form many parents probably remember from their school days.

Download the podcast or listen to it here.

Dr. Wells and others have shown that many of these pictures used dead moths, pinned in places that live ones never rest. The supposed science of peppered moth evolution has been shown to be false as well. But the pictures and the claims are persuasive, so some textbooks still use them. This prompts host Rob Crowther to ask Dr. Wells what parents can do to help their kids understand the truth?

I.D is already mainstream? II

“Oldest Known Drawing,” and More Cases of Intelligent Design at Work in Science

Evolution News | @DiscoveryCSC

Science as a routine matter expects to be able to differentiate between the results of natural and intelligent causes. Sound familiar? Several illustrations from recent news will help clarify.

Crayon Drawings on Rock

It would be fair to call this an inference to intelligent design. It’s being reported widely from a South African cave: red markings on a rock. Are they natural marks, or were they intelligently crafted? The The BBC News is among news sources calling this the “oldest known drawing,” made by choice and intent, not just for survival.

The drawing is about 73,000 years old, and shows cross-hatch lines sketched onto stone with red ochre pigment.

Scientists discovered the small fragment of the drawing —  which some say looks a bit like a hashtag — in Blombos Cave on the southern coast.

The find is “a prime indicator of modern cognition” in our species, the report says. 

The researchers feel that the fragment in their hands is just part of a larger work that was “probably more complex” in its entirety. “The abrupt termination of all lines on the fragment edges indicates that the pattern originally extended over a larger surface,” says one. That’s a bold design inference from just a few scratch marks! 

The paper in Nature uses that ID word “intention” again: “We conclude that the ochre crayon was intentionally used to produce a cross-hatched design.” Lo and behold, the word “design” shows up six times in the paper! Whatever the drawing meant, it represented “abstract and depictive representations produced by drawing” far earlier than previously known. The Editors of Nature go further, stating that “The earliest known drawing in history sends a message through 73,000 years.” Watch them overtly use design reasoning:

So, were these Palaeolithic hashtags actually designs intended to convey meaning, or mindless graffiti? Some might have been the unintentional result of another action, such as cutting food items, just like the scratches left on a chopping board after slicing a loaf.

A drawing, by contrast, is much harder to dismiss. To be sure, the one from Blombos is as cross-hatched as the engravings, but it could not have been created as the accidental by-product of another process.

If evolutionists want to deny that the conclusion of this paper supports intelligent design, and argue that drawing abstract patterns is just a natural behavior that our species does from time to time, then fine. Let them argue the same for published scientific papers!

Cut Marks on Bird Bones

Meanwhile, also at the BBC News, Helen Briggs tells how scientists just deduced that humans arrived on Madagascar 6,000 years earlier than thought.

 Prehistoric humans are under suspicion of wiping out the largest birds that ever lived after fossilised bones were discovered with telltale cut marks.

According to scientists, it’s evidence that the elephant birds of Madagascar were hunted and butchered for food.

Evolutionists might argue that humans are just animals, doing what animals do: acting like predators against these birds. But the “telltale cut marks” imply use of designed tools for hunting. The paper in Science Advances lists “purposefulness” as one of the criteria for determining that humans hunted these birds. “These marks are consistent with kerfs made by single-bladed, sharp lithic tools and multiple cutting actions intended to” cut the bones apart for consumption.

Fast Radio Bursts

Flush with a $100 million grant from Russian benefactor Yuri Milner, SETI scientists in the“Breakthrough Listen”project are seeking to understand mysterious flashes of light in deep space. Fast radio bursts, or FRBs, are usually one-off events coming from various directions in the sky. As such, they most likely have a natural cause, but intelligent causes cannot be ruled out arbitrarily.

 The source and mechanism of FRBs are still mysterious. Previous studies have shown that the bursts from 121102 are emanating from a galaxy 3 billion light years from Earth, but the nature of the object emitting them is still unknown. Theories range from highly magnetized neutron stars, blasted by gas streams near to a supermassive black hole, to suggestions that the burst properties are consistent with signatures of technology developed by an advanced civilization.

Look at the effort that went into this design-detection exercise:

In search of a deeper understanding of this intriguing object, the Listen science team at the University of California, Berkeley SETI Research Center observed FRB 121102 for five hours on August 26, 2017, using the Breakthrough Listen digital instrumentation at the GBT. Combing through 400 TB of data, they reported (in a paper led by Berkeley SETI postdoctoral researcher Vishal Gajjar, recently accepted for publication in the Astrophysical Journal) a total of 21 bursts. All were seen within one hour, suggesting that the source alternates between periods of quiescence and frenzied activity….

Whether or not FRBs themselves eventually turn out to be signatures of extraterrestrial technology, Breakthrough Listen is helping to push the frontiers of a new and rapidly growing area of our understanding of the Universe around us. 

Publish and Perish

Here’s an unusual case of the design inference that is somewhat reminiscent of Dembski’s illustration that a ballot fraud incident demonstrated intent to bias an election. In that case, the candidate for one party appeared at the top of the ballot more often than could be attributed statistically to chance, possibly to subconsciously influence voters to choose the first name they saw.

John Ioannidis is an unusual scientist; he researches research. He looks for unusual patterns in publication that suggest unethical behavior. In Nature, his team posted a surprising headline: “Thousands of scientists publish a paper every five days.” Unless these scientists are supermen, that seems highly suspect!

Ioannidis and his co-authors went out of their way to examine possibilities other than fraud. They listened to some of the “hyperprolific authors” who tried to explain their publishing records. They considered extenuating circumstances, such as being listed simply as a member of a large team, or as a token author who supervised another’s work. They even considered the possibility that the authors really are supermen:

Overall, hyperprolific authors might include some of the most energetic and excellent scientists. However, such modes of publishing might also reflect idiosyncratic field norms, to say the least. Loose definitions of authorship, and an unfortunate tendency to reduce assessments to counting papers, muddy how credit is assigned. One still needs to see the total publishing output of each scientist, benchmarked against norms for their field. And of course, there is no substitute for reading the papers and trying to understand what the authors have done.

Conclusion

We’ve seen cases in archaeology, astronomy, and publishing where research depends on the ability to distinguish natural causes from intelligent ones. That, of course, is what ID is all about. Actions speak louder than words, we all know. Some scientists may denounce “intelligent design” as a movement, but they find its practice very useful.

Yet more on Darwinism and the search for the master race.

New Documentary Human Zoos Isn’t Ancient History

David Klinghoffer | @d_klinghoffer

The new documentary Human Zoos is out now, and director and writer John West talks about it in an ID the Future episode. The idea of a human being displayed in a zoo, out of “scientific” interest, is shocking. And as West points out, African pygmy Ota Benga was “only one of thousands of indigenous peoples who were put on display in America in the name of Darwinian evolution.”

See the film now on Amazon Prime or get it on DVD or Blu-ray.

Remember, Benga’s humiliation in 1906 by scientists and showmen isn’t ancient history. Nor is the idea of “human zoos,” which were still seen as a reasonable tool of education and entertainment as late as 1958! The World Fair in Belgium that year included a display of Congolese natives, imported from Belgium’s notoriously abused African colonial holding.

It was the New York Times that defended Benga’s caging in the Bronx Zoo’s Monkey House, and patronized the African-American and other clergy who protested it, as West points out. Yes, that’s the same New York Times we know and love, still run by the same family that owned it in 1906. (The current publisher, A.G. Sulzberger, is great-great-grandson of the owner at the time.)

A Familiar Tone

The superior tone is familiar: “We do not quite understand all the emotion which others are expressing in the matter,” the editors huffed. Pygmies were “very low in the human scale,” you understand, and “whether they are really closer to the anthropoid apes than the other African savages, or whether they are viewed as the degenerate descendants of ordinary Negroes, they are of equal interest to the student of ethnology and can be studied with profit.”

The Times scoffed at proposals that Ota Benga should be freed from the zoo and given an education: 

The suggestion that Benga should be placed in a school instead of a cage ignores the high probability that school would be a place of torture to him and one from which he could draw no advantage whatever. The idea that men are all much alike except as they have had or lacked opportunities for getting an education out of books is now far out of date.

Notice the haughty appeal to the intellectual consensus of the day. They averred, referring to the African-American pastors who opposed Benga’s captivity, that “the reverend colored brothers should be told that evolution, in one form or another, is now taught in the textbooks of all the schools, that it is no more debatable than the multiplication table.”

“No more debatable than the multiplication table”! That could have been written with hardly a change of phrasing by a Darwin proponent, in the New York Times, today. 

On the Cessationism v. Continuationism controversy.

Politics poisons everything?

Suppressing Science at Brown University
David Klinghoffer | @d_klinghoffer

What happened to Lisa Littman at Brown offers the most recent evidence of how scientists are pressured not to stray beyond politically approved conclusions — something that ID researchers have known for a long time. Alex Barasch at Slate thinks that what has been done to Dr. Littman isn’t “censorship.”

  

All Brown and PLOS One have promised is a more rigorous review of the study design, which clearly warrants one; far from being censored, the paper remains fully accessible on the journal’s website. In other words, the scientific process is moving forward as usual.

Oh please. If not one of outright censorship, this a story of suppressing and intimidating a researcher who violated an implicit speech code. Littman published her (peer-reviewed) study in PLOS One, “Rapid-onset gender dysphoria in adolescents and young adults: A study of parental reports,”concluding that young people may pick up gender dysphoria socially, in part through circles of friends and social and other media. That’s not something you are supposed to say. PLOS One and Brown’s School of Public Health, where Littman teaches, caught blowback from activists, and Brown in particular collapsed under the pressure. 

A “Cautionary Tale”

They took down a news release from their website and replaced it with a“statement, community letter on gender dysphoria study.”The study of gender dysphoria is not the point of interest here. The trampling of academic freedom is. Jeffrey S. Flier, professor and former dean of Harvard Medical School, writes at Quillette that he is disquieted by Brown’s hanging Dr. Littman out to dry.

The fact that Brown University deleted its initial promotional reference to Dr Littman’s work from the university’s website — then replaced it with a note explaining how Dr Littman’s work might harm members of the transgender community — presents a cautionary tale.

Increasingly, research on politically charged topics is subject to indiscriminate attack on social media, which in turn can pressure school administrators to subvert established norms regarding the protection of free academic inquiry.

Here’s what happened:

There is no evidence for claims of misconduct in Dr Littman’s case. Rather, unnamed individuals with strong personal interests in the area under study seem to have approached PLOS One with allegations that her methodology and conclusions were faulty. Facing these assertions, which predictably drew support from social media communities populated by lay activists, the journal responded rapidly and publicly with the announcement that it would undertake additional expert review.

In all my years in academia, I have never once seen a comparable reaction from a journal within days of publishing a paper that the journal already had subjected to peer review, accepted and published. One can only assume that the response was in large measure due to the intense lobbying the journal received, and the threat — whether stated or unstated — that more social-media backlash would rain down upon PLOS One if action were not taken.

There were also said to be unidentified voices within the Brown community who expressed “concerns” about the paper. But when Brown responded to these concerns by removing a promotional story about Dr Littman research from the Brown website, a backlash resulted, followed by a web petition expressing alarm at the school’s actions. The dean of the School of Public Health, Bess Marcus, eventually issued a public letter explaining why the removal of the article from news distribution was “the most responsible course of action.”In her letter, Dean Marcus cites fears that “conclusions of the study could be used to discredit the efforts to support transgender youth and invalidate perspectives of members of the transgender community” (my italics). Why the concerns of these unidentified individuals should be accorded weight in the evaluation of an academic work is left unexplained.

The Really Cowardly Part

But this is the really cowardly part:

There is no suggestion whatsoever of support for Dr Littman, a faculty member in good standing for whom the personal and professional consequences of these events could be devastating. The dean of a school is in effect the dean of the faculty. While she must exercise balance and objectivity when controversial issues arise, her responsibilities include the expression of appropriate support for a beleaguered faculty member until and unless clear evidence emerges to impugn that scholar’s behavior or work.

You can still see the deleted press release via the Wayback Machine.The headline sounds proud of Dr. Littman’s accomplishment — “Brown researcher first to describe rapid-onset gender dysphoria.” But while I’ve sometimes misjudged the impact of things I’ve written, even I could have told them this was going to give offense to PC censors:

62 percent of parents reported their teen or young adult had one or more diagnoses of a psychiatric disorder or neurodevelopmental disability before the onset of gender dysphoria. Forty-eight percent reported that their child had experienced a traumatic or stressful event prior to the onset of their gender dysphoria, including being bullied, sexually assaulted or having their parents get divorced.

This suggests that the drive to transition expressed by these teens and young adults could be a harmful coping mechanism like drugs, alcohol or cutting, Littman said. 

You don’t have to take Littman’s paper down to “censor” or perhaps more accurately, “censure” her. Is her “methodology” sound? The paper’s peer reviewers clearly thought that it was. If they were wrong, let those who know better criticize and debate the merit of her work. That’s scholarship for you. 

But that is not what happened here. Littman has been served a very potent warning, potentially a “devastating” one, that when she is challenged by a mob, her university will not support her. It will panic and back right down, insinuating that she is at fault when there is no indication she actually is. Other researchers would be fools not to take serious note and to adjust their own work and thought accordingly.

Dreadfully Familiar

This is all dreadfully familiar to scientists who favor critiques of Darwinian theory and arguments for intelligent design. They have seen what happened to researchers who, perhaps naïvely, went public with their own reflections on the evidence for teleology in nature and biology. You’ll find some of those stories at the Free Science website.

Lisa Littman is Scott Minnich with a splash of Eric Hedin. I don’t know what is going on behind the scenes for this assistant professor — considerable distress, no doubt — but I hope there is no aspect of Richard Sternberg or Günter Bechly or Caroline Crocker.That is, I hope this does not end in her being forced out. I know plenty of other ID sympathizers, including at high-profile institutions, who would be put in serious jeopardy if their identifies were known. This is how the vaunted “academic consensus” is maintained.

Professor Flier says this business with Dr. Littman’s paper in PLOS One is without parallel in “all my years in academia.” That’s funny — I can think of a very close comparison. Just a couple of years ago the very same journal caved in response to a different mob of enraged activists after PLOS One published another peer-reviewed paper, this one by Chinese researchers, on the human hand and noting its “proper design by the Creator to perform a multitude of daily tasks in a comfortable way.”

As with Professor Littman, PLOS One issued a statement that “We are looking into the concerns raised about the article with priority and will take steps to correct the published record.” This was following online complaints, including by editors of the journal. It then retracted the paper. I wrote here, “The note of career anxiety — no, panic — is telling. These folks don’t want to be rendered ritually impure by contact with a bit of injudicious language.”

It’s the very same thing with Lisa Littman. Career anxiety is exactly how heterodox thought is policed and stamped out in the academic world. I’m sorry to associate Littman in any way with the taint of design science — I have no reason whatsoever to think she would appreciate it, or is in any way in sympathy with it. But the parallel must be pointed out.

I could add, coincidentally, this is also not unlike my own experience at Brown, though I was only an undergraduate not a scientist. It was perhaps the most educational thing that happened to me in college. See “Kafka Meets Coppedge.” Clearly, not much has changed.