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Sunday 11 December 2016

Is Darwinism falsifiable?

Thank Darwin for Dysteleology! Evolution Can't Lose
Casey Luskin 

A short article in Science, "The Burdens of Being a Biped," argues for evolution based on considerations of dysteleology. It claims that "A brief tour of the body reveals a number of design flaws." The problem, the article says, is that humans are built upon a quadrupedal body plan that wasn't "designed" to walk upright. This supposedly explains why we commonly suffer from back and other problems related to our bipedal locomotion.

Science quotes evolutionary anthropologist Bruce Latimer who asserts,

We've taken a body that was adapted to being horizontal to the ground and made it erect ... We've had to change nearly every bone in the body, and as a consequence, there are many things that humans suffer from that no other animal does.
So when natural selection fine-tunes a structure, that's evidence for evolution. But when "imperfect evolution" has "left us with vertebrae that break more easily, weaker bones, and feet prone to heel spurs and sprained ankles," that's also evidence of evolution. Dysteleology is great: evolution can't lose!
There's no question that we all face the prospect of bodily ailments we wish we could avoid. But Science has succumbed to the fallacy of arguing for evolution by citing undesirable design. In fact, undesirable features of our anatomy and physiology are no more a proof of evolution than they are a disproof of intelligent design.

Of course it's possible too that humans suffer from unique ailments having nothing to do with evolution. Maybe our unique problems stem from the fact that we're one of the only fully bipedal mammals -- by far the largest one, at that. In other words, we're a unique species, so it's not surprising we suffer ailments "that no other animal does."

There may be an additional explanation for why humans have so many back problems -- and it too has nothing to do with evolution. It may, however, have something to do with error or incompetence -- that is, on the part of the design's user, rather than the designer. As the article states:

Apes lose bone mass as they age as well, but they don't suffer fractures because their bones are so much denser to begin with. Humans could have more apelike bones if they got more exercise as youths, as early humans did, Ward says. "If we treated our skeletons the way they were designed to be treated, they would serve us better later in life."

So, our bodies work best when they get lots of exercise -- but that's exactly what we lazy folks in the Western world aren't getting enough of. If our bodies were "designed" to get more exercise, maybe the cause of many ailments isn't "design flaw," but user-error. Seems like when used properly, our bodies aren't so poorly designed after all.

Paradise:The watchtower society's commentary.

PARADISE

A beautiful park, or a parklike garden. The Greek word pa·raʹdei·sos occurs three times in the Christian Greek Scriptures. (Lu 23:43; 2Co 12:4; Re 2:7) Greek writers as far back as Xenophon (c. 431-352 B.C.E.) used the word , and Pollux attributed it to a Persian origin (pairidaeza). (Cyropaedia, I, iii, 14; Anabasis, I, ii, 7; Onomasticon, IX, 13) Some lexicographers would derive the Hebrew word par·desʹ (meaning, basically, a park) from the same source. But since Solomon (of the 11th century B.C.E.) used par·desʹ in his writings, whereas existing Persian writings go back only to about the sixth century B.C.E., such derivation of the Hebrew term is only conjectural. (Ec 2:5; Ca 4:13) The remaining use of par·desʹ is at Nehemiah 2:8, where reference is made to a royal wooded park of Persian King Artaxerxes Longimanus, in the fifth century B.C.E.—See PARK.

The three terms (Hebrew par·desʹ, Persian pairidaeza, and Greek pa·raʹdei·sos), however, all convey the basic idea of a beautiful park or parklike garden. The first such park was that made by man’s Creator, Jehovah God, in Eden. (Ge 2:8, 9, 15) It is called a gan, or “garden,” in Hebrew but was obviously parklike in size and nature. The Greek Septuagint appropriately uses the term pa·raʹdei·sos with reference to that garden. (See EDEN No. 1; GARDEN [Garden of Eden].) Because of sin, Adam lost his right to live in that paradise and his opportunity to gain the right to everlasting life, which right was represented in the fruit of a divinely designated tree in the center of the garden. The garden of Eden may have been enclosed in some way, since it was necessary to place angelic guards only at the east side thereof to prevent human entrance.—Ge 3:22-24.

What is the Paradise that Jesus promised to the evildoer who died alongside him?

Luke’s account shows that an evildoer, being executed alongside Jesus Christ, spoke words in Jesus’ defense and requested that Jesus remember him when he ‘got into his kingdom.’ Jesus’ reply was: “Truly I tell you today, You will be with me in Paradise.” (Lu 23:39-43) The punctuation shown in the rendering of these words must, of course, depend on the translator’s understanding of the sense of Jesus’ words, since no punctuation was used in the original Greek text. Punctuation in the modern style did not become common until about the ninth century C.E. Whereas many translations place a comma before the word “today” and thereby give the impression that the evildoer entered Paradise that same day, there is nothing in the rest of the Scriptures to support this. Jesus himself was dead and in the tomb until the third day and was then resurrected as “the firstfruits” of the resurrection. (Ac 10:40; 1Co 15:20; Col 1:18) He ascended to heaven 40 days later.—Joh 20:17; Ac 1:1-3, 9.

The evidence is, therefore, that Jesus’ use of the word “today” was not to give the time of the evildoer’s being in Paradise but, rather, to call attention to the time in which the promise was being made and during which the evildoer had shown a measure of faith in Jesus. It was a day when Jesus had been rejected and condemned by the highest-ranking religious leaders of his own people and was thereafter sentenced to die by Roman authority. He had become an object of scorn and ridicule. So the wrongdoer alongside him had shown a notable quality and commendable heart attitude in not going along with the crowd but, rather, speaking out in Jesus’ behalf and expressing belief in his coming Kingship. Recognizing that the emphasis is correctly placed on the time of the promise’s being made rather than on the time of its fulfillment, other translations, such as those in English by Rotherham and Lamsa, those in German by Reinhardt and W. Michaelis, as well as the Curetonian Syriac of the fifth century C.E., rendered the text in a form similar to the reading of the New World Translation, quoted herein.

As to the identification of the Paradise of which Jesus spoke, it is clearly not synonymous with the heavenly Kingdom of Christ. Earlier that day entry into that heavenly Kingdom had been held out as a prospect for Jesus’ faithful disciples but on the basis of their having ‘stuck with him in his trials,’ something the evildoer had never done, his dying on a stake alongside Jesus being purely for his own criminal acts. (Lu 22:28-30; 23:40, 41) The evildoer obviously had not been “born again,” of water and spirit, which Jesus showed was a prerequisite to entry into the Kingdom of the heavens. (Joh 3:3-6) Nor was the evildoer one of the ‘conquerors’ that the glorified Christ Jesus stated would be with him on his heavenly throne and that have a share in “the first resurrection.”—Re 3:11, 12, 21; 12:10, 11; 14:1-4; 20:4-6.

Some reference works present the view that Jesus was referring to a paradise location in Hades or Sheol, supposedly a compartment or division thereof for those approved by God. The claim is made that the Jewish rabbis of that time taught the existence of such a paradise for those who had died and were awaiting a resurrection. Regarding the teachings of the rabbis, Hastings’ Dictionary of the Bible states: “The Rabbinical theology as it has come down to us exhibits an extraordinary medley of ideas on these questions, and in the case of many of them it is difficult to determine the dates to which they should be assigned. . . . Taking the literature as it is, it might appear that Paradise was regarded by some as on earth itself, by others as forming part of Sheol, by others still as neither on earth nor under earth, but in heaven . . . But there is some doubt as respects, at least, part of this. These various conceptions are found indeed in later Judaism. They appear most precisely and most in detail in the mediaeval Cabbalistic Judaism . . . But it is uncertain how far back these things can be carried. The older Jewish theology at least . . . seems to give little or no place to the idea of an intermediate Paradise. It speaks of a Gehinnom for the wicked, and a Gan Eden, or garden of Eden, for the just. It is questionable whether it goes beyond these conceptions and affirms a Paradise in Sheol.”—1905, Vol. III, pp. 669, 670.

Even if they did teach such a thing, it would be most unreasonable to believe that Jesus would propagate such a concept, in view of his condemnation of the non-Biblical religious traditions of the Jewish religious leaders. (Mt 15:3-9) Likely the paradise truly familiar to the Jewish malefactor to whom Jesus spoke was the earthly Paradise described in the first book of the Hebrew Scriptures, the Paradise of Eden. That being so, Jesus’ promise would reasonably point to a restoration of such earthly paradisaic condition. His promise to the wrongdoer would therefore give assured hope of a resurrection of such an unrighteous one to an opportunity to life in that restored Paradise.—Compare Ac 24:15; Re 20:12, 13; 21:1-5; Mt 6:10.

A Spiritual Paradise. Throughout many of the prophetic books of the Bible, divine promises are found regarding the restoration of Israel from the lands of its exile to its desolated homeland. God would cause that abandoned land to be tilled and sown, to produce richly, and to abound with humankind and animalkind; the cities would be rebuilt and inhabited, and people would say: “That land yonder which was laid desolate has become like the garden of Eden.” (Eze 36:6-11, 29, 30, 33-35; compare Isa 51:3; Jer 31:10-12; Eze 34:25-27.) However, these prophecies also show that paradise conditions related to the people themselves, who, by faithfulness to God, could now “sprout” and flourish as “trees of righteousness,” enjoying beautiful spiritual prosperity like a “well-watered garden,” showered by bounteous blessings from God because of having his favor. (Isa 58:11; 61:3, 11; Jer 31:12; 32:41; compare Ps 1:3; 72:3, 6-8, 16; 85:10-13; Isa 44:3, 4.) The people of Israel had been God’s vineyard, his planting, but their badness and apostasy from true worship had caused a figurative ‘withering away’ of their spiritual field, even before the literal desolation of their land took place.—Compare Ex 15:17; Isa 5:1-8; Jer 2:21.

It is evident, however, that the restoration prophecies recorded by the Hebrew prophets include elements that will also find a physical fulfillment in the restored earthly Paradise. There are features, for example, in Isaiah 35:1-7, such as the healing of the blind and the lame, that did not have a literal fulfillment following the restoration from ancient Babylon, nor are they fulfilled in such a manner in the Christian spiritual paradise. It would be inconsistent for God to inspire such prophecies as those of Isaiah 11:6-9, Ezekiel 34:25, and Hosea 2:18, with the intention that they have only a figurative or spiritual meaning, without having a literal fulfillment of these things in the physical experiences of God’s servants. The paradise that Paul mentioned at 2 Corinthians 12:4 could also refer to the future paradise, both physical and spiritual, of these Hebrew prophecies, as well as possibly being a vision of “the paradise of God,” the blessed condition in heaven.—Re 2:7.


Eating in “the Paradise of God.” Revelation 2:7 mentions a “tree of life” in “the paradise of God” and that eating from it would be the privilege of the one “that conquers.” Since other promises given in this section of Revelation to such conquering ones clearly relate to their gaining a heavenly inheritance (Re 2:26-28; 3:12, 21), it seems evident that “the paradise of God” in this case is a heavenly one. The word “tree” here translates the Greek word xyʹlon, which literally means “wood,” and in the plural could refer to an orchard of trees. In the earthly Paradise of Eden, eating of the tree of life would have meant living forever for man. (Ge 3:22-24) Even the fruit of the other trees of the garden would have been life sustaining for man as long as he continued obedient. So, the partaking of “the tree [or trees] of life” in “the paradise of God” evidently relates to the divine provision for sustained life granted the Christian conquerors, other texts showing that they receive the prize of immortality and incorruptibility along with their heavenly Head and Lord, Christ Jesus.—1Co 15:50-54; 1Pe 1:3, 4.

Are green jobs the economic future?

Big government = small citizen?:Pros and cons.

Russia's war on religious liberty IV

Is there such a thing as scientifically detecting design?

Saturday 10 December 2016

Back to the Drawing board re:planet formation?

Weirdly tilted exoplanet knocks formation theory out of line
November 27, 2015 Posted by News under Exoplanets, Intelligent Design


From New Scientist: Recent theory:

The idea is that smaller, colder stars have thicker atmospheres. “That provides handles with which the star can grab onto the planet and vice versa,” Winn says. Over time, those gravitational handles exert a tidal force on the planet, pulling it and its star into alignment.

But then:

But one Jupiter-mass planet discovered earlier this year, HATS-14b, seems to threaten that idea. Because it tightly circles a small star, its orbit should have flattened out quickly – but the orbit is instead tilted a whopping 76 degrees from the plane in which its star spins.

“It should have aligned with the spin of the host star, and what we’re finding is that it has not,” says study leader George Zhou, who conducted the research at the Australian National University in Canberra. “It was quite obvious from some of the very first measurements that it was an outlier.” … Understanding why, or finding other planets like HATS-14b, could knock down the tidal theory – which even Winn is starting to doubt.

In another new paper, Winn and Gongjie Li of Harvard University address another flaw in the traditional idea… More.

Hmmmm. The first exoplanets began to be discovered in the early 1990s. It’s probably too early for strong theories.

Here’s the abstract:

The obliquities of planet-hosting stars are clues about the formation of planetary systems. Previous observations led to the hypothesis that for close-in giant planets, spin-orbit alignment is enforced by tidal interactions. Here, we examine two problems with this hypothesis. First, Mazeh and coworkers recently used a new technique — based on the amplitude of starspot-induced photometric variability — to conclude that spin-orbit alignment is common even for relatively long-period planets, which would not be expected if tides were responsible. We re-examine the data and find a statistically significant correlation between photometric variability and planetary orbital period that is qualitatively consistent with tidal interactions. However it is still difficult to explain quantitatively, as it would require tides to be effective for periods as long as tens of days. Second, Rogers and Lin argued against a particular theory for tidal re-alignment by showing that initially retrograde systems would fail to be re-aligned, in contradiction with the observed prevalence of prograde systems. We investigate a simple model that overcomes this problem by taking into account the dissipation of inertial waves and the equilibrium tide, as well as magnetic braking. We identify a region of parameter space where re-alignment can be achieved, but it only works for close-in giant planets, and requires some fine tuning. Thus, while we find both problems to be more nuanced than they first appeared, the tidal model still has serious shortcomings. Open access – Gongjie Li, Joshua N. Winn

From president to emperor?Pros and cons.

The spoon rather than the knife?Pros and cons.

Long live big brother?Pros and cons.

A clash of Titans XL

A clash of Titans XXXIX

Playing with fire?

On Darwinism's zombie stories.

Daddy and Baby: Evolutionary Legends Die Hard

David Klinghoffer 


A colleague shares this gem from a get-together with friends:

I was hanging out with some friends last night and one of them is pregnant. Another gal in the group told her that her baby will look like the dad at first because this is a product of evolution -- a way to confirm paternity. Of course I knew it was a just-so story and here's an article in Scientific American actually admitting that. I just think it's interesting because they rarely admit stuff like that. This article is old, but obviously people still talk about the issue.

The referenced article is from 2011:


Recent studies do not support the claim of an enhanced resemblance between fathers and their young offspring

Does junior really have his father's nose?

A common bit of parenting folklore holds that babies tend to look more like their fathers than their mothers, a claim with a reasonable evolutionary explanation. Fathers, after all, do not share a mother's certainty that a baby is theirs, and are more likely to invest whatever resources they have in their own offspring. Human evolution, then, could have favored children that resemble their fathers, at least early on, as a way of confirming paternity.

The paternal-resemblance hypothesis got some scientific backing in 1995, when a study in Nature by Nicholas Christenfeld and Emily Hill of the University of California, San Diego, showed that people were much better at matching photos of one-year-old children with pictures of their fathers than with photos of their mothers....

Case closed? Hardly. "It's a very sexy result, it's seductive, it's what evolutionary psychology would predict -- and I think it's wrong," says psychologist Robert French of the National Center for Scientific Research in France. A subsequent body of research, building over the years in the journal Evolution & Human Behavior, has delivered results in conflict with the 1995 paper, indicating that young children resemble both parents equally. Some studies have even found that newborns tend to resemble their mothers more than their fathers.

It goes on from there. Read the rest.

The other day Doug Axe referred to the "legend" of natural selection with its creative prowess in generating biological novelties. But of course the legend has many sub-legends and derivatives. They die hard.

How many years, how many decades from now do you think consumers of science media will be getting together and sharing this particular tall tale, after even professional evolutionists have ceased to believe in it?

When cheer leading supersedes fact-checking.

Feathers on a Bird or Dinosaur Tail? The Media Are Certain; the Scientific Evidence Less So
Evolution News & Views 

A section of a 99-million-year-old feathered tail discovered in a chunk of amber in Myanmar belongs to a juvenile dinosaur, a coelurosaur, not a bird. The media are certain of it. The actual evidence is more ambiguous. National Geographic pounds the pulpit for a feathered dino:

First Dinosaur Tail Found Preserved in Amber
The tail of a 99-million-year-old dinosaur, including bones, soft tissue, and even feathers, has been found preserved in amber, according to a report published today in the journal Current Biology.

While individual dinosaur-era feathers have been found in amber, and evidence for feathered dinosaurs is captured in fossil impressions, this is the first time that scientists are able to clearly associate well-preserved feathers with a dinosaur, and in turn gain a better understanding of the evolution and structure of dinosaur feathers.

...

The semitranslucent mid-Cretaceous amber sample, roughly the size and shape of a dried apricot, captures one of the earliest moments of differentiation between the feathers of birds of flight and the feathers of dinosaurs.

...

The presence of articulated tail vertebrae in the sample enabled researchers to rule out the possibility that the feathers belonged to a prehistoric bird. Modern birds and their closest Cretaceous ancestors feature a set of fused tail vertebrae called a pygostyle that enables tail feathers to move as a single unit.

The reason that they claim it is a dinosaur and not a bird is because this is supposedly from a "long-tailed" individual. Most birds with bony tails are short-tailed, meaning they have fewer vertebrae in their tail compared to dinosaurs. Under ten vertebrae, perhaps only six or seven, would be the norm for a bony-tailed bird.

So what do they think about the number of vertebrae in this amber fossil? They say the living individual "likely" had more than 25 vertebrae.

But this is a matter of inference, because, as the paper admits, the soft tissue in the fossil is so undifferentiated from the bone that it is very difficult to tell what is tissue and what are vertebrae. As the paper puts it in technical language:

SR X-ray μCT scanning of DIP-V-15103 revealed that soft tissues have a density insufficiently different from the partially replaced skeletal elements to permit X-ray imaging and virtual dissection of osteology alone. Consequently, many diagnostic and comparative osteological details remain obscured.
At most, they can see clear evidence of only two vertebrae in this tail. From that they extrapolate that it had more than 25:

However, two vertebrae are clearly delineated ventrally (Figures 1F-1H). Extrapolating lengths of these vertebrae, the preserved tail section contains at least eight full vertebrae and part of a ninth.
So when they extrapolate from the two visible vertebrae, they get nine. That would certainly not preclude the creature from being a bird. In fact, some fossil birds had up to 20 to 23 vertebrae. As another paper states:

Archaeopteryx retained an ancestral caudal vertebral count of between 20 and 23. The next most basal bird, Jeholornis, from the Jiufotang Formation of China and dated at approximately 120 million years old, was also long-tailed, and had 22 caudal vertebrae that are nearly identical to those of Archaeopteryx.
If it did have up to 20 to 23 vertebrae, it could still be a bird. Yet again it's not clear exactly how many vertebrae this tail had because too much of it is missing.

The paper goes on:

Even with the skin adpressed to the bony surface, no features other than the grooved ventral sulci of two centra are clearly visible. This lack of topography suggests that the vertebrae lack prominent neural arches, transverse processes, or hemal arches. Therefore, the preserved segment is only a small mid to distal portion of what was likely a relatively long tail, with the total caudal vertebral count not reasonably less than 15, and likely greater than 25.
So they claim that the shape of the vertebrae suggests that what they are seeing is from the middle of the tail, and the actual tail was much longer. They admit that most features are not "clearly visible." Given that you can barely distinguish soft tissue from bone in this fossil, their inferences go too far.

Indeed while researcher Ryan McKellar tells Science Daily that "the feathers definitely are those of a dinosaur not a prehistoric bird," the paper itself is more circumspect, saying "it can likely be excluded from the long-tailed birds" (emphasis added). The Supplemental Information that goes with the paper includes the notable statement:

[T]here is a distinctive ventral groove on the caudal centra of the specimen, which is widely distributed among non-avialan theropods but which has yet to be reported in avialans (though the possibility of its presence in the two known long-tailed birds Archaeopteryx and Jeholornis cannot be excluded).
As a final note, one could argue that the age of the fossil (about 99 Ma) suggests that this individual lived long after known long-tailed bony-tailed birds. According to this paper, the most recent long-tailed bony-tailed bird lived about 122 million years ago.

That would be a very weak argument, however, since evolutionists regularly tolerate chronological gaps in the fossil record much greater than 20 million years. In fact they do this in their dinosaur-to-bird hypothesis.

After all, the dinosaurs that they claim supposedly gave rise to birds lived about 125 million years ago, but true birds like Archaeopteryx lived as far as about 150 million years ago. That's a major time gap. So if one were to propose that perhaps the long-tailed birds known from ~122 million years ago survived until ~99 million years ago, you would not be extrapolating fossil lineages any more than they already do.

In any case, all praise is due to the researchers for discovering and presenting this beautiful fossil with its unmistakable feathers. Probably no known feathers this old have ever been preserved in such gorgeous detail.


But unfortunately we have so little material, and the bone is so difficult to distinguish from the soft tissue, that any strong claims about this tail should be greeted with skepticism. This paper will not be the last word on the nature of the animal that sported this wonderful tail.

Optimal and then some.

Respect for Kinesin Grows
Evolution News & and Views December 10, 2015 5:39 PM 



The Discovery Institute video "Workhorse of the Cell: Kinesin" premiered last year on YouTube. Since then, additional facts about these molecular motors have come to light. Some highlights:

Relay Handoff

Kinesin-II, one of the extended family of kinesin motors, is involved in a "relay race" on a micro-miniature scale. It demonstrates how different families of molecular motors cooperate. This one works in synergy with other cargo-carrying motors in the important complex function known as "intra-flagellar transport" (IFT) that builds and maintains cilia and flagella. An important example occurs in the neurons of the eye.

O'Hagan and Barr, writing for Nature Cell Reports, describe "A motor relay on ciliary tracks" between kinesin-II and another motor. It turns out that kinesin-II is the marathoner running up the neuron into the crowded transition zone (TZ), where it "hands off" its cargo a sprinter named OSM-3 that runs it up to the cilium tip.

Peterman, Scholey and colleagues have now discovered a previously unappreciated complexity in the cooperation of anterograde motors using advanced techniques ....

They find that kinesin-II acts as an import motor that transports cargos from the distal dendrite into the ciliary TZ (Fig. 1). Because the TZ is cluttered with obstacles such as Y-link attachments, kinesin-II (with its tendency to frequently detach from microtubules) may easily sidestep obstructions, switching to an adjacent microtubule protofilament to continue on its path to deliver cargo to the PS [proximal segment]. A similar model of obstacle avoidance was proposed to function in axons, in which kinesin-2 binds the same cargo as kinesin-1 to allow the complex to sidestep around Tau protein obstacles.

The authors then observed gradual acceleration of IFT in the PS, accompanied by a gradual decrease in abundance of kinesin-II and concurrent increase in OSM-3 (KIF17) (Fig. 1). The acceleration resulting from changing the ratio of kinesin-II to OSM-3 did not match previous predictions from in vitro data. Instead, a biased contribution model, in which OSM-3 outcompetes kinesin-II ten-fold, fitted the acceleration observed in vivo. These results suggested a 'handover zone' in the PS, in which kinesin-II gradually hands over its transport duties to the faster and more processive OSM-3, which then acts as an efficient long-range motor to bring IFT complexes to the ciliary tip. [Emphasis added.]

Noting that different kinds of cilia in various species have different families of motors acting together, the authors describe "an emerging theme" in IFT research. They sugest that "kinesin-II plays an essential role in ciliogenesis, whereas accessory motors are associated with specializations in ciliary form and function." Many debilitating diseases are known to occur from mutations in IFT.

It's amusing how they used the word "evolution" only one time. "Why did evolution add another anterograde motor when heterotrimeric kinesin-II seems capable of doing the job alone in algae?" As it turns out, this relay race is an efficient way to get the job done. Kinesin-II and OSM-3 each have their strengths, and each one is matched for its environment. Then, at the ciliary tip, another molecular motor -- dynein -- takes cargo back down.

The paper by Scholey and Peterman and colleagues in Nature Cell Biology doesn't have anything to say about evolution. Instead, the scientists explain why "functional differentiation" provides the best way to get cargo delivered on time:

Dissociated kinesin-II motors undergo rapid turnaround and recycling to the ciliary base, whereas OSM-3 is recycled mainly to the handover zone. This reveals a functional differentiation in which the slower, less processive kinesin-II imports IFT trains into the cilium and OSM-3 drives their long-range transport, thereby optimizing cargo delivery.

Kinesin-II is no slouch as a runner. In our video, it appears to walk slowly and deliberately, but remember: the narrator says it can take a hundred steps a second. The researchers seem to like the word "optimize," using it four times in all, such as:

We propose that the functional differentiation of kinesin-II and OSM-3 into an import motor and transport motor, respectively, optimizes sequential steps of anterograde IFT to build the cilium. The system thus exploits each kinesin-2's specific motor properties and requires that the number of motors on the cargo, that is, the IFT train, is well orchestrated, resulting in a gradual exchange of the different motors to ensure reliable handover of cargo (Fig. 7). In a broader context, the deployment of similar, same-polarity yet functionally differentiated motors may represent a common strategy for optimizing intracellular transport.

"Optimize" is a design term. Evolutionists, by contrast, are fond of "tinkering," wherein natural selection supposedly cobbles together parts just to get by. Which word is a better match to the observations?

Myosin Mimicry

Another walking motor is myosin, which walks along actin filaments instead of microtubules. Bioengineers at Emory University weren't quite able to imitate its motion, but they did improve on previous attempts by inventing a DNA-based motor that rolls like a wheel. At first, the news from Emory makes it sound like they bested nature:

"Unlike other synthetic DNA-based motors, which use legs to 'walk' like tiny robots, ours is the first rolling DNA motor, making it far faster and more robust," says Khalid Salaita, the Emory University chemist who led the research. "It's like the biological equivalent of the invention of the wheel for the field of DNA machines."

But then they have nothing but praise for natural myosin:

The field of synthetic DNA-based motors, also known as nano-walkers, is about 15 years old. Researchers are striving to duplicate the action of nature's nano-walkers. Myosin, for example, are tiny biological mechanisms that "walk" on filaments to carry nutrients throughout the human body.

"It's the ultimate in science fiction," Salaita says of the quest to create tiny robots, or nano-bots, that could be programmed to do your bidding. "People have dreamed of sending in nano-bots to deliver drugs or to repair problems in the human body."

So far, however, mankind's efforts have fallen far short of nature's myosin, which speeds effortlessly about its biological errands. "The ability of myosin to convert chemical energy into mechanical energy is astounding," Salaita says. "They are the most efficient motors we know of today."

The engineer makes this blunder in his reasoning, though:

"Our DNA-based motor can travel one centimeter in seven days, instead of 20 years, making it 1,000 times faster than the older versions," Salaita says. "In fact, nature's myosin motors are only 10 times faster than ours, and it took them billions of years to evolve."

For one thing, myosins are present in the earliest cells we know of, so it didn't take them "billions of years to evolve." For another, if he applied intelligence to build a cheap mimic, wouldn't that be evidence that the superior product required an intelligent cause?

Molecular Ruler

We see myosin at work in another role described in a paper in Nature Communications: helping maintain the cytoskeleton. There's an "evolutionarily conserved" group of "Rho-associated coiled-coil kinases" (ROCK) that "are essential regulators of the actin cytoskeleton" on which myosins travel. The authors give us a glimpse into the precarious balance of motors that keep a cell's membrane intact:

The ability of cells to change shape underpins physiological processes from embryonic development through pathogen clearance in the immune system. The plasma membrane of cells exhibits high mechanical resistance yet permits enormous changes in cell shape. This apparent paradox is resolved by a dynamic network of actin and myosin filaments beneath the plasma membrane that forms the cortical cytoskeleton. Stress fibres, bundles of actin fibres and myosin II motors traverse the cell between focal adhesions that anchor the cell in the extracellular matrix. Actomyosin contraction against these anchors generates the force required for shape change and cell motility. Phosphorylation of regulatory myosin light chain (RMLC) stimulates myosin activity, leading to contractile force generation. The Rho-associated coiled-coil kinases (ROCK) are essential for the maintenance and integrity of stress fibres in the cell by directly and/or indirectly phosphorylating RMLC. A null mutant of the Drosophila Rok gene or deletion of ROCK1 or ROCK2 in mice results in prenatal lethality.

Their diagrams show that ROCK acts as a "molecular ruler" due to the length of its coiled coil. "This represents a new type of spatial control, and hence a new paradigm for kinase regulation."

They try to make a case for ROCK evolving at the origin of multicellularity, but it's little more than speculation. "Given the role of ROCK in regulating actin dynamics at focal adhesions, it is tempting to speculate that the emergence of ROCK together with the integrin-mediated signalling machinery was a crucial event in metazoan evolution." Exactly how machinery "emerges" by blind processes is not clear. One thing is clear: it is "evolutionarily conserved throughout the animal kingdom." In fact, it is "remarkably well conserved across more than 600 million years of evolution." That's hardly something to make an evolutionist cheer. We'll take their concluding automotive analogy instead. It sounds more like design.

Our findings indicate that the activity of the Rho kinases is regulated by the spatial positioning of kinase and substrate in the cell, much like the clutch in a car engine determines whether the car is in gear or not. The engine, or kinase, is always running, but the car, or cell, doesn't move unless the clutch, or substrate, is engaged. This represents a new paradigm in kinase-substrate regulation, whereby substrate specificity and corresponding activity are simply governed by the precise spatial positioning of enzyme and substrate.

So there you have it. Cells are inhabited by molecular motors and engines with precision parts operating under tight regulations. Now you can watch our video animation with a little more appreciation for what these amazing molecular machines do for all life, including you.

Jehovah's Justice prevails

Why accepting I.D may not necessitate an embrace of the supernatural.

ID for Materialists:
January 25, 2016 Posted by Barry Arrington under Intelligent Design

Teleology in biology is unavoidable.  Dawkins was surely correct when he wrote that “Biology is the study of complicated things that give the appearance of having been designed for a purpose.”  He even characterized that appearance as “overwhelming.”  Of course, Dawkins does not believe living things were designed, and his entire project has been to convince his readers that the overwhelming appearance of design is an illusion.

The problem with the “it is all a grand illusion” position is that as science has progressed – even in the relatively short time since Dawkins wrote those words in 1987 – it has become increasingly more difficult to believe.  Advances in our understanding of genetics have revealed a semiotic code of staggering elegance and complexity, the replication of which is far beyond the ability of our best computer programmers.  The more we know about the cell, the more it becomes apparent that it is a marvel of nano-technology.  Origin of life researchers, when they are honest, admit that even the most simple life is miraculously complex, and the likelihood of living things having arose spontaneously through chance interactions of matter is vanishingly small.  I could go on, but you get the picture.

What is an honest materialist to do?  One approach is to jettison materialism altogether, as famous former arch-atheist Antony Flew did.  Flew insisted that while he did not believe in a personal God, he was nevertheless driven to deism by advances in origins of life science.  He wrote that “[t]he philosophical question that has not been answered in origin-of-life studies is this: How can a universe of mindless matter produce beings with intrinsic ends, self-replication capabilities, and ‘coded chemistry’?”  That question remains unanswered.

Another approach is to retain one’s materialism while positing the existence of yet-undiscovered natural telic laws.  This is the approach Thomas Nagel took in his Mind and Cosmos: Why the Materialist Neo-Darwinian Conception of Nature is Almost Certainly False.  It occurred to me recently that this approach may well be the most likely way for honest, curious and courageous materialists to accept the evidence on its own terms and at the same time find common ground with ID proponents.

RDFish is one of the most voracious proponents of materialism (which he prefers to call monist physicalism) ever to appear in these pages.  In one of his comments he argued that biological ID is committed to dualism.  I responded by arguing that while biological ID is certainly consistent with metaphysical dualism, it is not necessarily tied to it, and it can be accepted even by physicalist monists.  See here.

In the linked post I argued that a physicalist monist can accept a version of ID through the following reasoning:

Design, meaning the capacity to arrange matter for a purpose, exists as a category of causation.
The capacity to arrange matter for a purpose can be reduced to any force that is capable of arranging matter in the present so that it will have an effect in the future.
There are at least two candidates for causal forces that have the capacity to arrange matter for a purpose. (a)  intelligent agents who have an immaterial mental capacity; (b) an impersonal non-conscious yet-to-be-discovered natural telic force.
The monist rejects the existence of intelligent agents with immaterial mental capacities, because the existence of such agents obviously entails dualism.
Instead, the monist can resort to the natural telic force.
If such a natural telic force exists, the existence of design as a category of causation is no obstacle to accepting the truth of monist physicalism.
This get us to:

If monist physicalism is true and a natural telic force exists, it is nevertheless possible objectively to infer design.
Therefore, design may be inferred under monist physicalism using the explanatory filter.
Therefore, ID does not depend on dualist metaphysical assumptions and can be accepted by a monist.
Which brings us back to Nagel.  In his book Nagel argued that Neo-Darwinism has failed to account for the data and is therefore almost certainly false.  But Nagel is an inveterate atheist and he is unwilling to give up on atheistic monism.  For Nagel, rejecting Neo-Darwinism does not entail embracing a dualist conception of ID.  Instead, he has posited what can be called a monist conception of ID by proposing the existence of natural telic laws.

In his book Being as Communion Bill Dembski writes that Nagel’s conception of teleology is completely consistent with ID writ large:

Nagel proposes to understand teleology in terms of natural teleological laws.  These laws would be radically different from the laws of physics and chemistry that currently are paradigmatic of the laws of nature.  And yet, as we shall see, such teleological laws fit quite naturally within an information-theoretic framework . . . his proposal, given in Mind and Cosmos . . . connects point for point with the account of information given in this book.  Indeed, Nagel’s teleological laws are none other than the directed searches (or alternative searches) that are the basis of Conservation of Information . . . of this book.

When orthodox Christian theist Bill Dembski says that he and vigorously atheistic materialist Thomas Nagel hold views that can – at a fundamental level – be reconciled, the rest of us should sit up and take notice.  And Dembski is not alone among theists in noting how Nagel’s views are compatible with their tradition broadly construed.  Christian philosopher Edward Feser writes:

[Nagel] rightly suggests that theists ought to be open to the idea of immanent teleology of the Aristotelian sort.  He may not be aware that medieval theologians like Aquinas were committed to precisely that.

Of course, Aquinas believed in the immanent teleology inherent in all things.  The only difference between Aquinas and Nagel is that Aquinas believed that God infused those things with immanent teleology; whereas Nagel believes the teleology results from a natural telic law.  But for our purposes isn’t the obvious teleology – that even Dawkins recognizes while denying – the important thing, at least as an initial question about the objective nature of things?

If theists and materialists can agree about the objective existence of teleology in nature, can we not also agree that – at least while we are doing science – questions about the ultimate provenance of that teleology can be held in abeyance?

I see a number of advantages of this approach for both sides.  For the materialists, the advantages are obvious.  They will be able to accept on face value the common sense conclusion their materialism has until now forced them to deny.  Teleology exists.  And at the same time they will not be forced to allow Lewontin’s dreaded “divine foot” in the door, because a “natural telic law” is not even an agent, far less a divine (or even conscious) agent.  For theists, as I have argued all along, ID can be adopted to both a monist and a dualist metaphysics.  And I, when I am not doing science, will continue to argue that God is the best candidate for the provenance of the teleology.  At the same time, by allowing for the possibility of a natural telic law, we ID proponents will not have the doors of science slammed in our face on account of the “creationism in a cheap tuxedo” argument.

The better choice.

Friday 9 December 2016

liberty,equality,brotherhood?

Currently Turned Against Pro-Lifers, French Totalitarian Impulse Can Easily Jump Oceans
David Klinghoffer 

Years ago when I was younger and more strident, I had a dinner conversation with a woman friend who, I realized too late, I didn't know quite as well as I thought. I should have understood that abortion isn't something to discuss like any other casual meal topic. I was stating a pro-life view when she suddenly put down her fork and left the restaurant. I found her crying outside and that was the end of the evening.

Was it asinine of me not to grasp that a woman, any woman, might have a painful personal history relevant to the subject that I as a man could not have? Yes. There's a time and a place for everything, and there are more or less sensitive ways to talk about abortion and human life. Lucky for me, though, this was New York City in the 1990s and not France in 2016.

On the heels of censoring a TV ad meant to discourage women from aborting Down syndrome children, the French Senate and National Assembly have gone further and voted to criminalize online pro-life activism. For applying "moral and psychological pressure," making women feel guilty, no matter how sensitive you are in applying this moral pressure, you could face prison and fines!

Alexandra DeSanctis reports at National Review:

The French Senate today adopted a bill criminalizing the posting of pro-life information online, a measure that was passed by the French National Assembly just last week. Violators face a maximum of two years in prison and over $30,000 in fines. The measure makes it a crime for pro-life individuals or activists to obstruct a woman's lawful decision to have an abortion, or to cause her guilt after the fact.

...

[T]he bill defines obstruction not only as the physical effort to block an abortion clinic, for example, but also "psychological obstacles..."

...

[M]any analysts agree that the bill will be interpreted to criminalize any person or website that posts information regarding alternatives to abortion, or even that espouses the Christian belief that the church considers abortion to be immoral. [Emphasis added.]

On the radio, Dennis Prager makes the important point that we wrongly see liberalism and leftism as being on some kind of continuum. Not so. The world could benefit from more genuine liberals. Leftism, on the other hand, is distinguished by its totalitarianism. In this case, the totalitarianism is wedded to scientism, the belief that science unmoored from other sources of values should reign supreme, including in defining which opinions may or may not be lawfully expressed.


This is scary, not because we live in France but because ideas like this are contagious and easily cross oceans. Do you doubt for a minute that some of our homegrown true believers that science has all the answers would love to hold the law more firmly in their grasp to wield against skeptics like us?

Thursday 8 December 2016

Modern medicine v. Darwin.

LSU Ophthalmologist Commends a "Design Approach" in Appraising Supposedly Vestigial Organs
Ann Gauger


Sometimes when our worldview is wrong, we miss important things. The Darwinian point of view in particular may lead to false assumptions. A doctor, Alan B. Richards, who teaches at the Health Sciences Center at Louisiana State University, writes to us with an example. He describes a part of the eye that many consider to be vestigial, that is, an evolutionary holdover from the past that now supposedly serves no function. He points out that viewing the tissue in question as vestigial can lead to serious mistakes. Because it actually serves a purpose, surgeons who are ignorant of that purpose can inadvertently cause damage.

Writes Dr. Richards:

Here are a couple of observations from the world of medicine regarding the dangers of a purely Darwinist approach.

I have read several sources about the plica semilunaris in the eye, and even among intelligent design advocates, no one seems to explain this misunderstood part of the body.

I am a pediatric ophthalmologist and I teach residents how to perform eye muscle surgery. The plica semilunaris is the curvilinear pinkish tissue in each person's eye nasally. According to neo-Darwinian advocates, the tissue is a useless holdover from evolution, a vestigial tissue of the nictitating membrane in other mammals. Residents, who are generally a bright bunch, routinely quote this "truth" to me each year. Thus, residents tend to be careless with this tissue unless taught properly.

When performing surgery for esotropia ("crossed eyes"), one must be very careful with the plica semilunaris. The tissue can easily be improperly attached too far temporally, as at the end of surgery the plica looks much like the normal conjunctiva that covers the eye (plica is modified conjunctiva).

I explain to the residents that the plica is needed to allow the eye to move outward or temporally, and sewing the plica in the wrong location can not only result in a dreadful red appearance to the eye, but the eye can be drawn inward.

In the first few years of my practice, I saw an unfortunate Vietnamese gentleman, who had immigrated to the USA during the upheaval in Southeast Asia ("boat people"). He had a benign growth on the nasal portion of his eyes (a pterygium). The operation to remove this lesion is usually straightforward, but whoever performed his surgery neglected the plica and sewed the plica semilunaris too far temporally, resulting in very crossed eyes and double vision. Understandable upset, I had to perform eye muscle surgery (strabismus surgery) to restore his vision to normal.

Since the residents may not consider me an authority on the subject of ocular anatomy, I give this this quote from Dr. Darlene A. Dartt, Associate Professor of Ophthalmology at Harvard Medical School in Duane's Clinical Ophthalmology, a well respected standard text on all aspects of ophthalmology, the first comprehensive ophthalmology text in the USA. (Thomas Duane, the editor, was chairman of ophthalmology at Wills Eye Hospital in Philadelphia, where I trained, the second-ranked ophthalmology program in the USA. Also, he was a former chairman of the American Medical Association's ophthalmology section and edited two standard reference works, Clinical Ophthalmology and The Biomedical Foundations of Ophthalmology.)

These words are from Chapter 2, "The Conjunctiva-Structure and Function":

The plica semilunaris is a crescent-shaped fold of conjunctiva that is situated medially and conjoins the bulbar conjunctiva with the caruncle and lacrimal portion of the eyelids (Fig. 3). It is located in the superior fornix at the junction of extending downward, surrounding the limbus to end in the inferior fornix. It extends 3 to 6 mm laterally from the caruncle. The nictitating membrane present in some animals is the counterpart to the plica, and is a partial or complete third eyelid. Although humans do not have a nictitating membrane, occasionally smooth muscle fibers may be present that are innervated with sympathetic nerves. Goblet cells are present in the plica either singly or in clusters. In humans, the plica functions as the opposite of a fornix; that is, if the conjunctiva were to directly join the eyelids to the globe, the globe and eyelids would both be restricted in movement. The fornix provides for a fold of conjunctiva that may be extended or retracted as the globe moves. Extension occurs because of fibrous slips that connect the fornix to its extra ocular rectus muscle. As the muscle contracts, the globe rotates and the adjacent conjunctiva is retracted. This occurs above, laterally, and below the globe, but not medially, which would not allow the lacrimal puncta to drain the lacrimal lake. On abduction the plica tends to unfold and flatten, whereas on adduction it is drawn posteriorly and is unfolded by the fibrous slips that extend to the plica and caruncle from the medial rectus. While it never completely unfolds, extreme adduction of the plica causes it to form a true fornix. As this occurs, a small movement of the globe occurs as a result of the retraction of the medial canthal tendon. This keeps the lacrimal puncta properly positioned with the lacrimal lake. The puncta now dips into the lacrimal strip to allow continuous drainage despite the position of the globe. In addition, the plica helps to maintain the lacrimal lake in its proper position and location in the puncta.

The bold type and underlining are my emphasis: properly the nictitating membrane is the counterpart or analog to the plica; calling the plica vestigial ignores its function. (How does one prove an organ has no function, without very, very careful study?) While the plica is not as important as some other portions of the eye (e.g., the retina, the optic nerve), the structure still serves an important function.

Thus, a design approach (whether or not one accepts common ancestry, directed theistic evolution (highly recommend "Evolution of Living Organisms" by Pierre-P Grasse), or sudden or progressive creation) results in clearer thinking than the approach that man is a result of random accidents and full of useless organs.

Alan B. Richards, MD
Clinical Assistant Professor
LSU Health Sciences Center
Shreveport, LA

Assuming non-function, or in this case, vestigiality, seems to be the default position of neo-Darwinism. When a biological structure seems useless, or it seems to be broken, and yet it appears to be derived from a similar structure in other organisms, the leap is made to say that the thing under study is evolutionary detritus that has not been completely removed by natural selection.

We have seen this viewpoint before. Junk DNA and pseudogenes, for example, have been considered to be evolutionary leftovers that are non-functional. You can even see the assumption in the names these genetic elements were given. But as time goes on, more and more functions are being discovered for junk DNA and pseudogenes.


The intelligent design intuition, in contrast, is to assume function, that things are there for a purpose, and are not merely some evolutionary holdover. I wonder how many "functionless" things like the plica semilunaris will be found to have function after all, once we begin to look more carefully using a design perspective.

Wednesday 7 December 2016

The big deal re:The Royal society's peek under darwinism's hood

Why the Royal Society Meeting Mattered, in a Nutshell
Evolution News & Views

We devoted considerable attention to last month's Royal Society meeting in London. Otherwise, the three-day conference on "New Trends in Evolutionary Biology" was kept rather quiet in the media.

Oh, there were a few reports. Writing for the Huffington Post, science journalist Suzan Mazur complained of a lack of momentousness: "[J]ust what was the point of attracting a distinguished international gathering if the speakers had little new science to present? Why waste everyone's time and money?" On the other hand, a write-up in The Atlantic by Carl Zimmer acknowledged a sense of strain between rival claques of evolutionists: "Both sides offered their arguments and critiques in a civil way, but sometimes you could sense the tension in the room -- the punctuations of tsk-tsks, eye-rolling, and partisan bursts of applause."

Mild drama notwithstanding, why should anyone care about this meeting?

Despite the muffled coverage, the meeting was still significant in a number of ways. First, remember that the Royal Society is arguably the world's most august scientific body. Its founders included Robert Boyle and it was later headed for 24 years (1703-1727) by Isaac Newton -- a fact that is hard to forget when they have his death mask on prominent display in a glass case. Portraits of Boyle and Newton on the walls look down from above. The historical connections lent a certain weight by themselves to the proceedings.

That such a thoroughly mainstream scientific organization should now at last acknowledge problems with the received neo-Darwinian theory of evolution is also obviously notable. Indeed, from our point of view, though presenters ignored, dismissed, or mocked ID, not realizing the number of design-friendly scientists in the audience, the proceedings confirmed something ID advocates, including Stephen Meyer and others, have been saying for years.

Consider, for example, Meyer's provocative claim in the Prologue to Darwin's Doubt:

The technical literature in biology is now replete with world-class biologists routinely expressing doubts about various aspects of neo-Darwinian theory, and especially about its central tenet, namely the alleged creative power of the natural selection and mutation mechanism.

Nevertheless, popular defenses of the theory continue apace, rarely if ever acknowledging the growing body of critical scientific opinion about the standing of the theory. Rarely has there been such a great disparity between the popular perception of a theory and its actual standing in the relevant peer-reviewed science literature.

The opening presentation at the Royal Society conference by one of those world-class biologists, Austrian evolutionary theorist Gerd Müller, underscored exactly Meyer's point. Müller opened the meeting by discussing several of the fundamental "explanatory deficits" of "the modern synthesis," that is, textbook neo-Darwinian theory. (Discovery Institute's Paul Nelson recounted Müller's remarks here, on which in part we base the following.) According to Müller, the as yet unsolved problems include those of explaining:

Phenotypic complexity (the origin of eyes, ears, body plans, i.e., the anatomical and structural features of livings);

Phenotypic novelty, i.e., the origin of new forms throughout the history of life (for example, the mammalian radiation some 66 million years ago, in which the major orders of mammals, such as cetaceans, bats, carnivores, enter the fossil record, or even more dramatically, the Cambrian explosion, with most animal body plans appearing more or less without antecedents); and finally

Non-gradual forms or modes of transition, where you see abrupt discontinuities in the fossil record between different types.

As Müller has explained in previously published work (with Stuart Newman), although "the neo-Darwinian paradigm still represents the central explanatory framework of evolution, as represented by recent textbooks" it "has no theory of the generative."1 In other words, the neo-Darwinian mechanism of mutation and natural selection lacks the creative power to generate the novel anatomical traits and forms of life that have arisen during the history of life. Yet, as Müller noted, neo-Darwinian theory continues to be presented to the public via textbooks as the canonical understanding of how new living forms arose -- reflecting precisely the tension between the perceived, and actual, status of the theory that Meyer described in Darwin's Doubt.

Yet, the most important lesson of the Royal Society conference lies not in its vindication of claims that our scientists have made, gratifying as that might be to us, but rather in defining the current problems and state of research in the field. The conference did an excellent job of defining the problems that evolutionary theory has failed to solve, but it offered little, if anything, by way of new solutions to those longstanding fundamental problems.

Much of the conference subsequent to Müller's talk did discuss various other proposed evolutionary mechanisms. Indeed, the prime movers in the Royal Society event, Müller, along with James Shapiro, Denis Noble, and Eva Jablonka -- the "Third Way of Evolution" crowd -- have proposed repairing the explanatory deficits of the modern synthesis by highlighting evolutionary mechanisms other than random mutation and natural selection. Much debate at the conference centered around the question of whether these new mechanisms could be incorporated into the basic population genetics framework of neo-Darwinism, thus making possible a new "extended" evolutionary synthesis, or whether the emphasis on new mechanisms of evolutionary change represented a radical, and theoretically incommensurable, break with established theory. This largely semantic, or classificatory, issue obscured a deeper question that few, if any, of the presentations confronted head on: the issue of the origin of genuine phenotypic novelty -- the problem that Müller described in his opening talk.

Indeed, by the end of Day 3 of the meeting, it seemed clear to many of our scientists, and others in attendance with whom they talked, that the puzzle of life's novelties remained unsolved -- if, indeed, it had been addressed at all. As a prominent German paleontologist in the crowd concluded, "All elements of the Extended Synthesis [as discussed at the conference] fail to offer adequate explanations for the crucial explanatory deficits of the Modern Synthesis (aka neo-Darwinism) that were explicitly highlighted in the first talk of the meeting by Gerd Müller."

In Darwin's Doubt, for example, Meyer emphasized the obvious importance of genetic and other (i.e., epigenetic) types of information to building novel phenotypic traits and forms life. The new mechanisms offered by the critics of neo-Darwinism at the conference -- whether treated as part of an extended neo-Darwinian synthesis or as the basis of a fundamentally new theory of evolution -- did not attempt to explain how the information necessary to generating genuine novelty might have arisen. Instead, the mechanisms that were discussed produce at best minor microevolutionary changes, such as changes in wing coloration of butterflies or the celebrated polymorphisms of stickleback fish.

Moreover, the mechanisms that were discussed -- niche construction, phenotypic plasticity, natural genetic engineering, and so on -- either presupposed the prior existence of the biological information necessary to generate novelty, or they did not address the mystery of the origin of that information (and morphological novelty) at all. (Not all the mechanisms addressed were necessarily new, by the way. Niche construction and phenotypic plasticity have been around for a long time.)

Complex behaviors such as nest-building by birds, or dam construction by beavers, represent examples of niche construction in which some organisms themselves demonstrate the capacity to alter their environment in ways that may affect the adaptation of subsequent generations to the environment. Yet no advocate of niche construction at the meeting explained how the capacity for such complex behaviors arose de novo in ancestral populations, as they must have done if the naturalistic evolutionary story is true.

Rather, these complex behaviors were taken as givens, leaving the critical question of their origins more or less untouched. While there is abundant evidence that animals can learn and transmit new behaviors to their offspring -- crows in Japan, for instance, have learned how to use automobile traffic to crack open nuts -- all such evidence presupposes the prior existence of specific functional capacities enabling observation, learning, and the like. The evolutionary accounts of niche construction theory therefore collide repeatedly with a brick wall marked "ORIGINAL COMPLEX FUNCTIONAL CAPACITY REQUIRED HERE" -- without, or beyond which, there would simply be nothing interesting to observe.

Jim Shapiro's talk, clearly one of the most interesting of the conference, highlighted this difficulty in its most fundamental form. Shapiro presented fascinating evidence showing, contra neo-Darwinism, the non-random nature of many mutational processes -- processes that allow organisms to respond to various environmental challenges or stresses. The evidence he presented suggests that many organisms possess a kind of pre-programmed adaptive capacity -- a capacity that Shapiro has elsewhere described as operating under "algorithmic control." Yet, neither Shapiro, nor anyone else at the conference, attempted to explain how the information inherent in such algorithmic control or pre-programmed capacity might have originated.

This same "explanatory deficiency" was evident in the discussions of the other mechanisms, though we won't attempt to demonstrate that exhaustively here. We would direct readers, however, to Chapters 15 and 16 of Darwin's Doubt, where Meyer highlighted the way in which, not just neo-Darwinism, but also newer evolutionary mechanisms, including many discussed at the conference, fail to solve the question of the origin of information necessary to generate novelty. In those chapters, he reviewed a range of proposed fixes to the Modern Synthesis. He acknowledged and described the various advantages that many of these proposals have over neo-Darwinism, but also carefully explained why each of these mechanisms falls short as an explanation for the origin of the biological information necessary to build novel structures and forms of animal life. He quoted paleontologist Graham Budd who has observed: "When the public thinks about evolution, they think about [things like] the origin of wings....But these are things that evolutionary theory has told us little about."

Many fascinating talks at the Royal Society conference described a number of evolutionary mechanisms that have been given short shrift by the neo-Darwinian establishment. Unfortunately, however, the conference will be remembered, as Susan Mazar intimated in her coverage, for its failure to offer anything new. In particular, in our judgment, it failed to offer anything new that could help remedy the main "explanatory deficit" of the neo-Darwinian synthesis -- its inability to account for the origin of phenotypic novelty and especially, the genetic and epigenetic information necessary to produce it. These are still problems that evolutionary theory tells us little about.

Notes:


(1) Gerd Müller and Stuart Newman, On the Origin of Organismal Form (Cambridge, MA: MIT Press, 2003), p.7.