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Monday 2 November 2015

The Watchtower Society's commentary on biblical manuscripts

MANUSCRIPTS OF THE BIBLE:

The Holy Scriptures have a superhuman origin as to content but a human history as to their writing and preservation. Moses began compiling them under divine inspiration in 1513 B.C.E., and the apostle John wrote the final portion thereof more than 1,600 years later. The Bible was not originally one book, but as time passed, a demand arose for copies of its various books. This was so, for instance, after the Babylonian exile, for not all released Jews returned to the land of Judah. Instead, many settled elsewhere, and synagogues sprang up throughout the vast territory of the resultant Jewish Dispersion. Scribes prepared copies of the Scriptures needed for these synagogues where the Jews gathered to hear the reading of God’s Word. (Ac 15:21) In later times, among Christ’s followers, conscientious copyists labored to reproduce the inspired writings for the benefit of the multiplying Christian congregations so that there might be an interchange and general circulation of these.—Col 4:16.

Before printing from movable type became common (from the 15th century C.E. onward), the original Bible writings and also copies of them were handwritten. Hence, they are called manuscripts (Latin, manu scriptus, “written by hand”). A Bible manuscript is a handwritten copy of the Scriptures, the whole or in part, as distinguished from one that is printed. Bible manuscripts were produced principally in the form of rolls and codices.

Materials. There are leather, papyrus, and vellum manuscripts of the Scriptures. The noted Dead Sea Scroll of Isaiah, for instance, is a leather roll. Papyrus, a type of paper made from the fibers of a water plant, was used for Bible manuscripts in the original languages and for translations thereof until about the fourth century C.E. At that time its use for Bible manuscripts began to be superseded by the use of vellum, a fine grade of parchment generally made from calf, lamb, or goat skins, a further development of the earlier use of animal skins as writing material. Such manuscripts as the renowned Codex Sinaiticus (Sinaitic Manuscript) and the Codex Vaticanus (Vatican Manuscript No. 1209) of the fourth century C.E. are parchment, or vellum, codices.

A palimpsest (Lat., palimpsestus; Gr., pa·limʹpse·stos, meaning “scraped again”) is a manuscript from which earlier writing was removed or scraped off to make room for later writing. A noted Bible palimpsest is the Codex Ephraemi Syri rescriptus of the fifth century C.E. If the earlier writing (the writing scraped off) is the important one on the palimpsest, scholars can often read this erased writing by employing technical means that include the use of chemical reagents and photography. Some manuscripts of the Christian Greek Scriptures are lectionaries, selected Bible readings for use at religious services.

Styles of Writing. Bible manuscripts written in Greek (whether translations of the Hebrew Scriptures, or copies of the Christian Greek Scriptures, or both) can be divided, or classified, as to writing style, which is also an aid in dating them. The older style (employed especially down to the ninth century C.E.) is the uncial manuscript, written in large, separated capital letters. In it there is generally no word separation, and punctuation and accent marks are lacking. The Codex Sinaiticus is such an uncial manuscript. Changes in writing style began to develop in the sixth century, eventually leading (in the ninth century C.E.) to the cursive, or minuscule, manuscript, written in smaller letters, many of which were joined in a running or flowing writing style. The majority of extant manuscripts of the Christian Greek Scriptures have a cursive script. Cursive manuscripts remained in vogue until the inception of printing.

Copyists. As far as is known today, no handwritten original, or autograph, manuscripts of the Bible are in existence. Yet the Bible has been preserved in accurate, reliable form because Biblical copyists in general, accepting the Scriptures as being divinely inspired, sought perfection in their arduous labor of producing manuscript copies of God’s Word.

The men who copied the Hebrew Scriptures in the days of Jesus Christ’s ministry on earth and for centuries before that time were called scribes (Heb., soh·pherimʹ). Among the early scribes was Ezra, spoken of in the Scriptures as “a skilled copyist.” (Ezr 7:6) Later scribes made some deliberate alterations of the Hebrew text. But their scribal successors, the Masoretes, detected these and recorded them in the Masora, or notes appearing in the margins of the Hebrew Masoretic text they produced.

Copyists of the Christian Greek Scriptures also made earnest efforts to reproduce faithfully the text of the Scriptures.

What assurance is there that the Bible has not been changed?

Despite the care exercised by copyists of Bible manuscripts, a number of small scribal errors and alterations crept into the text. On the whole, these are insignificant and have no bearing on the Bible’s general integrity. They have been detected and corrected by means of careful scholastic collation or critical comparison of the many extant manuscripts and ancient versions. Critical study of the Hebrew text of the Scriptures commenced toward the end of the 18th century. Benjamin Kennicott published at Oxford (in 1776-1780) the readings of over 600 Masoretic Hebrew manuscripts, and the Italian scholar Giambernardo de Rossi published at Parma comparisons of 731 manuscripts in 1784 to 1798. Master texts of the Hebrew Scriptures were also produced by the German scholar Baer and, more recently, by C. D. Ginsburg. Hebrew scholar Rudolf Kittel released in 1906 the first edition of his Biblia Hebraica (The Hebrew Bible), providing therein a textual study through a footnote service, comparing many Hebrew manuscripts of the Masoretic text. The basic text he used was the Ben Chayyim text. But, when the older and superior Ben Asher Masoretic texts became available, Kittel undertook the production of an entirely new third edition, which was completed by his colleagues after his death.

The 7th, 8th, and 9th editions of the Biblia Hebraica (1951-1955) furnished the basic text used to render the Hebrew Scriptures into English in the New World Translation of the Holy Scriptures originally published in 1950-1960. A new edition of the Hebrew text, namely Biblia Hebraica Stuttgartensia, is dated 1977. This edition was used for updating the information presented in the footnotes of the New World Translation published in 1984.

The first printed edition of the Christian Greek Scriptures was that appearing in the Complutensian Polyglott (in Greek and Latin), of 1514-1517. Then in 1516 the Dutch scholar Desiderius Erasmus published his first edition of a master Greek text of the Christian Greek Scriptures. It contained many errors, but an improved text thereof was made available through four succeeding editions from 1519 to 1535. Later, Paris printer and editor Robert Estienne, or Stephanus, issued several editions of the Greek “New Testament,” based principally on Erasmus’ text, but having corrections according to the Complutensian Polyglott and 15 late manuscripts. The third edition of Stephanus’ Greek text (issued in 1550) became, in effect, the “Received Text” (called textus receptus in Latin), which was used for many early English versions, including the King James Version of 1611.

Quite noteworthy in more recent times is the master Greek text prepared by J. J. Griesbach, who availed himself of materials gathered by others but who also gave attention to Biblical quotations made by early writers such as Origen. Further, Griesbach studied the readings of various versions, such as the Armenian, Gothic, and Philoxenian. He viewed extant manuscripts as comprising three families, or recensions, the Byzantine, the Western, and the Alexandrian, giving preference to readings in the latter. Editions of his master Greek text were issued between 1774 and 1806, his principal edition of the entire Greek text being published in 1796-1806. Griesbach’s text was used for Sharpe’s English translation of 1840 and is the Greek text printed in The Emphatic Diaglott, by Benjamin Wilson, in 1864.

A Greek master text of the Christian Greek Scriptures that attained wide acceptance is that produced in 1881 by Cambridge University scholars B. F. Westcott and F. J. A. Hort. It was the product of 28 years of independent labor, though they compared notes regularly. Like Griesbach, they divided manuscripts into families and leaned heavily on what they termed the “neutral text,” which included the renowned Sinaitic Manuscript and the Vatican Manuscript No. 1209, both of the fourth century C.E. While Westcott and Hort viewed matters as quite conclusive when these manuscripts agreed and especially when they were supported by other ancient uncial manuscripts, they were not bound to that position. They took every conceivable factor into consideration in endeavoring to solve problems presented by conflicting texts; and when two readings were of equal weight, that, too, was indicated in their master text. The Westcott and Hort text was the one used principally in translating the Christian Greek Scriptures into English in the New World Translation. However, the New World Bible Translation Committee also consulted other excellent Greek texts, among them Nestle’s Greek text (1948).

Commenting on the history of the text of the Christian Greek Scriptures and the results of modern textual research, Professor Kurt Aland wrote: “It can be determined, on the basis of 40 years of experience and with the results which have come to light in examining . . . manuscripts at 1,200 test places: The text of the New Testament has been excellently transmitted, better than any other writing from ancient times; the possibility that manuscripts might yet be found that would change its text decisively is zero.”—Das Neue Testament—zuverlässig überliefert (The New Testament—Reliably Transmitted), Stuttgart, 1986, pp. 27, 28.

The extant manuscripts of the Christian Scriptures (in Greek and other languages) show textual variations. Variations are to be expected in view of human imperfection and the copying and recopying of manuscripts, especially by many copyists who were not professionals. If certain manuscripts had a common ancestor manuscript, perhaps came from a particular revision of early texts, or were produced in a particular area, they would probably have at least some variations in common, and hence they are said to belong to the same family, or group. On the basis of similarity in such differences, scholars have sought to classify the texts into groups, or families, the number of which has increased with the passing of time, till reference is now made to the Alexandrian, Western, Eastern (Syriac and Caesarean), and the Byzantine texts, represented in various manuscripts or in different readings scattered throughout numerous manuscripts. But despite the variations peculiar to different manuscript families (and the variations within each group), the Scriptures have come down to us in essentially the same form as that of the original inspired writings. The variations of reading are of no consequence as to Bible teachings in general. And scholastic collations have corrected errors of any importance, so that today we enjoy an authentic and reliable text.

Since Westcott and Hort produced their refined Greek text, a number of critical editions of the Christian Greek Scriptures have been produced. Noteworthy among them is The Greek New Testament published by the United Bible Societies and now in its third edition. Identical in wording is the 26th edition of the so-called Nestle-Aland text, published in 1979 in Stuttgart, Germany.—See CHRISTIAN GREEK SCRIPTURES.

Manuscripts of Hebrew Scriptures. There are possibly 6,000 manuscripts of all or portions of the Hebrew Scriptures extant today in various libraries. The vast majority contain the Masoretic text and are of the tenth century C.E. or thereafter. The Masoretes (of the second half of the first millennium C.E.) sought to transmit the Hebrew text faithfully and made no changes in the wording of the text itself. However, to preserve the traditional pronunciation of the vowelless consonantal text, they devised systems of vowel pointing and accenting. Additionally, in their Masora, or marginal notes, they drew attention to textual peculiarities and gave corrected readings they considered necessary. It is the Masoretic text that appears in printed Hebrew Bibles of the present day.

Damaged Hebrew Scripture manuscripts used in Jewish synagogues were replaced by verified copies, and the defaced or damaged manuscripts were stored in a genizah (a synagogue storeroom or repository). Finally, when it was full, the manuscripts were removed and ceremoniously buried. Doubtless many ancient manuscripts perished in that way. But the contents of the synagogue genizah in Old Cairo were spared, probably because it was walled up and forgotten for centuries. Following the rebuilding of the synagogue in 1890 C.E., the manuscripts in its genizah were reexamined, and from there fairly complete Hebrew Scripture manuscripts and fragments (some said to be of the sixth century C.E.) found their way into various libraries.

One of the oldest extant fragments containing Biblical passages is the Nash Papyrus, found in Egypt and preserved at Cambridge, England. Evidently part of an instructional collection, it is of the second or first century B.C.E. and consists of only four fragments of 24 lines of a pre-Masoretic text of the Ten Commandments and some verses of Deuteronomy, chapters 5 and 6.

Since 1947 many Biblical and non-Biblical scrolls have been found in various areas W of the Dead Sea, and these are referred to generally as the Dead Sea Scrolls. Most significant among them are manuscripts discovered in a number of caves in and about the Wadi Qumran (Nahal Qumeran). These are also known as the Qumran texts and evidently once belonged to a Jewish religious community centered at nearby Khirbet Qumran (Horvat Qumeran). The first discovery was made by a Bedouin in a cave about 15 km (9.5 mi) S of Jericho, where he found a number of earthenware jars containing ancient manuscripts. One of these was the now-renowned Dead Sea Scroll of Isaiah (1QIs⁠a), a well-preserved leather roll of the entire book of Isaiah, except for a few gaps. (PICTURE, Vol. 1, p. 322) It contains a pre-Masoretic Hebrew script and has been dated toward the end of the second century B.C.E. Hence, it is about a thousand years older than the oldest extant manuscript of the Masoretic text. However, though showing some differences in spelling and grammatical construction, it does not vary doctrinally from the Masoretic text. Among the documents recovered in the Qumran area are fragments of over 170 scrolls representing parts of all Hebrew Scripture books except Esther, and in the case of some books, more than one copy exists. These manuscript scrolls and fragments are believed to range in date from about 250 B.C.E. to about the middle of the first century C.E., and they exhibit more than one type of Hebrew text, such as a proto-Masoretic text or one underlying the Greek Septuagint. Studies of such materials are still in progress.

Among notable vellum Hebrew manuscripts of the Hebrew Scriptures is the Cairo Karaite Codex of the Prophets. It contains the Masora and vocalization, and its colophon indicates that it was completed in about 895 C.E. by the noted Masorete Moses ben Asher of Tiberias. Another significant manuscript (of 916 C.E.) is the Petersburg Codex of the Latter Prophets. The Aleppo Sephardic Codex, once preserved at Aleppo, Syria, and now in Israel, until recently contained the entire Hebrew Scriptures. Its original consonantal text was corrected, punctuated, and furnished with the Masora about 930 C.E. by Aaron ben Asher, son of Moses ben Asher. The oldest dated manuscript of the complete Hebrew Scriptures in Hebrew is the Leningrad Manuscript No. B 19⁠A, preserved in the Public Library in St. Petersburg, Russia. It was copied in 1008 C.E. “from the corrected books prepared and annotated by Aaron ben Moses ben Asher the teacher.” Another noteworthy Hebrew manuscript is a codex of the Pentateuch preserved in the British Library (Codex Oriental 4445), consisting of Genesis 39:20 to Deuteronomy 1:33 (except for Nu 7:46-73 and 9:12–10:18, which are lacking or have been supplied by a later hand) and probably dating from the tenth century C.E.

Many manuscripts of the Hebrew Scripture portion of the Bible were written in Greek. Among those of particular note is one in the collection of the Fouad Papyri (Inventory Number 266, belonging to the Société Egyptienne de Papyrologie, Cairo), containing portions of Genesis and of the second half of Deuteronomy according to the Septuagint. It is of the first century B.C.E. and shows, in various places, the divine name written in square Hebrew characters within the Greek text. Fragments of Deuteronomy, chapters 23 to 28, are found in Rylands Papyrus iii. 458 of the second century B.C.E., preserved in Manchester, England. Another leading manuscript of the Septuagint contains fragments of Jonah, Micah, Habakkuk, Zephaniah, and Zechariah. In this leather scroll, dated to the end of the first century C.E., the divine name is rendered by the Tetragrammaton written in ancient Hebrew characters.—See NW appendix, pp. 1562-1564.

Manuscripts of Christian Greek Scriptures. The Christian Scriptures were written in Koine. Though no original autograph manuscripts thereof are known to exist today, according to one calculation, there are some 5,000 extant manuscript copies, whole or in part, of these Scriptures in Greek.

Papyrus manuscripts. Biblical papyri of great importance were among papyrus codices found in Egypt about 1930, their purchase being announced in 1931. Some of these Greek codices (dating from the second to the fourth centuries C.E.) consist of parts of eight Hebrew Scripture books (Genesis, Numbers, Deuteronomy, Isaiah, Jeremiah, Ezekiel, Daniel, and Esther), and three contain portions of 15 books of the Christian Greek Scriptures. Most of these Scriptural papyri were purchased by an American manuscript collector, A. Chester Beatty, and are now preserved in Dublin, Ireland. The rest were acquired by the University of Michigan and by others.

The international designation for Biblical papyri is a capital “P” followed by a small superior number. The Chester Beatty Papyrus No. 1 (P⁠45) consists of parts of 30 leaves from a codex that probably once had about 220 leaves. P⁠45 has portions of the four Gospels and the book of Acts. The Chester Beatty Papyrus No. 3 (P⁠47) is a fragmentary codex of Revelation containing ten somewhat damaged leaves. These two papyri are believed to be from the third century C.E. Quite noteworthy is the Chester Beatty Papyrus No. 2 (P⁠46) believed to be from about 200 C.E. It has 86 somewhat damaged leaves out of a codex that probably had 104 leaves originally, and it still contains nine of Paul’s inspired letters: Romans, Hebrews, First Corinthians, Second Corinthians, Ephesians, Galatians, Philippians, Colossians, and First Thessalonians. It is noteworthy that the letter to the Hebrews is included in this early codex. Since Hebrews does not give its writer’s name, its composition by Paul has frequently been disputed. But this letter’s inclusion in P⁠46, evidently consisting of Paul’s letters exclusively, indicates that in about 200 C.E., Hebrews was accepted by early Christians as an inspired writing of the apostle Paul. The letter to the Ephesians appears in this codex, thus also refuting arguments that Paul did not write this letter.

At the John Rylands Library, Manchester, England, there is a small papyrus fragment of John’s Gospel (some verses of chapter 18) cataloged as Rylands Papyrus 457. It is internationally designated as P⁠52. This is the oldest extant manuscript fragment of the Christian Greek Scriptures, having been written in the first half of the second century, possibly about 125 C.E., and thus only a quarter of a century or so after John’s death. The fact that a copy of John’s Gospel was evidently circulating in Egypt (the place of the fragment’s discovery) by that time shows that the good news according to John was really recorded in the first century C.E. and by John himself, not by some unknown writer well along in the second century C.E., after John’s death, as some critics once claimed.

The most important addition to the collection of Biblical papyri since the discovery of the Chester Beatty Papyri was the acquisition of the Bodmer Papyri, published between 1956 and 1961. Particularly noteworthy are Papyrus Bodmer 2 (P⁠66) and Papyrus Bodmer 14, 15 (P⁠75), both written about 200 C.E. Papyrus Bodmer 2 contains a large part of the Gospel of John, while Papyrus Bodmer 14, 15 has much of Luke and John and is textually very close to Vatican Manuscript No. 1209.

Vellum manuscripts. Bible manuscripts written on vellum sometimes include both the Hebrew and Christian Greek Scripture portions of the Bible, though some are only of the Christian Scriptures.

Codex Bezae, designated by the letter “D,” is a valuable manuscript of the fifth century C.E. Though its actual place of origin is unknown, it was acquired in France in 1562. It contains the Gospels, the book of Acts, and only a few other verses, and is an uncial manuscript, written in Greek on the left-hand pages, with a parallel Latin text appearing on the right-hand pages. This codex is preserved at Cambridge University in England, having been presented to that institution by Theodore Beza in 1581.

Codex Claromontanus (D2) is likewise written in Greek and Latin on opposite pages, Greek on the left and Latin on the right. It contains Paul’s canonical letters, including Hebrews, and is considered to be of the sixth century. It was reportedly found in the monastery at Clermont, France, and was acquired by Theodore Beza, but it is now preserved at the Bibliothèque Nationale in Paris.

Among more recently discovered vellum manuscripts of the Christian Greek Scriptures is Codex Washingtonianus I, containing the Gospels in Greek (in the common Western order: Matthew, John, Luke, and Mark). It was obtained in 1906 in Egypt and is preserved at the Freer Gallery of Art, Washington, D.C. The international symbol of this codex is “W,” and it is thought to have been written in the fifth century C.E., except that apparently, because of damage, part of John was replaced in the seventh century C.E. Codex Washingtonianus II, having the symbol “I,” is also in the Freer Collection and contains portions of Paul’s canonical letters, including Hebrews. This codex is believed to have been written in the fifth century C.E.

Hebrew and Christian Greek Scriptures. The most important and most complete extant Bible manuscripts in Greek were written on vellum in uncial letters.

Vatican Manuscript No. 1209. The Vatican Manuscript No. 1209 (Codex Vaticanus), designated internationally by the symbol “B,” is an uncial codex of the fourth century C.E., possibly produced in Alexandria, and it originally contained the entire Bible in Greek. A corrector of later date retraced the letters, perhaps because the original writing had faded, except that he skipped letters and words he considered incorrect. Originally this codex probably had approximately 820 leaves, of which 759 remain. Most of Genesis is gone, as well as a part of Psalms, Hebrews 9:14 to 13:25, and all of First and Second Timothy, Titus, Philemon, and Revelation. Codex Vaticanus is preserved at the Vatican Library in Rome, Italy, and is known to have been there as early as the 15th century. However, Vatican Library authorities made access to the manuscript extremely difficult for scholars and did not publish a full photographic facsimile of the entire codex until 1889-1890.

Sinaitic Manuscript. The Sinaitic Manuscript (Codex Sinaiticus) is also of the fourth century C.E., but Codex Vaticanus may be a little older. The Sinaitic Manuscript is designated by the symbol א (ʼaʹleph, first letter in the Hebrew alphabet), and while it evidently once contained the entire Bible in Greek, part of the Hebrew Scriptures has been lost. However, it has all the Christian Greek Scriptures. Likely this codex originally consisted of 730 leaves, at least, though the whole or parts of just 393 are now verified to be extant. It was discovered (one portion in 1844 and another in 1859) by the Bible scholar Konstantin von Tischendorf at the Monastery of St. Catherine at Mount Sinai. Forty-three leaves of this codex are kept in Leipzig, portions of three leaves are at St. Petersburg, Russia, and 347 leaves are preserved at the British Library in London. It has been reported that 8 to 14 more leaves were discovered in the same monastery in 1975.

Alexandrine Manuscript. The Alexandrine Manuscript (Codex Alexandrinus), designated by the letter “A,” is a Greek uncial manuscript containing most of the Bible, including the book of Revelation. Of possibly 820 original leaves, 773 have been preserved. This codex is generally considered to be of the first half of the fifth century C.E., and it is also preserved in the British Library.—PICTURE, Vol. 2, p. 336.

Codex Ephraemi Syri rescriptus. The Codex Ephraemi Syri rescriptus (Codex Ephraemi), designated internationally by the letter “C,” is also generally considered to have originated in the fifth century C.E. It is written in Greek uncials on vellum and is a rewritten codex, a palimpsest manuscript. The original Greek text was removed, and a number of leaves were then written over with discourses of Ephraem Syrus (the Syrian), rendered in Greek. This was done probably during the 12th century, when there was a scarcity of vellum. However, the underlying text has been deciphered. While “C” evidently once contained all the Scriptures in Greek, just 209 leaves remain, 145 being of the Christian Greek Scriptures. Hence, this codex now contains only portions of Hebrew Scripture books and parts of all books of the Christian Greek Scriptures except Second Thessalonians and Second John. It is preserved at the Bibliothèque Nationale in Paris.

Reliability of the Bible Text. Appreciation of the reliability of the Bible is greatly enhanced when it is realized that, by comparison, there are only very few extant manuscripts of the works of classical secular writers and none of these are original, autograph manuscripts. Though they are only copies made centuries after the death of the authors, present-day scholars accept such late copies as sufficient evidence of the authenticity of the text.

Extant Hebrew manuscripts of the Scriptures were prepared with great care. Respecting the text of the Hebrew Scriptures, scholar W. H. Green observed: “It may be safely said that no other work of antiquity has been so accurately transmitted.” (Archaeology and Bible History, by J. P. Free, 1964, p. 5) The late Bible text scholar Sir Frederic Kenyon made this reassuring statement in the introduction to his seven volumes entitled The Chester Beatty Biblical Papyri: “The first and most important conclusion derived from the examination of them [the Papyri] is the satisfactory one that they confirm the essential soundness of the existing texts. No striking or fundamental variation is shown either in the Old or the New Testament. There are no important omissions or additions of passages, and no variations which affect vital facts or doctrines. The variations of text affect minor matters, such as the order of words or the precise words used. . . . But their essential importance is their confirmation, by evidence of an earlier date than was hitherto available, of the integrity of our existing texts. In this respect they are an acquisition of epoch-making value.”—London, 1933, Fasciculus I, p. 15.

Concerning the Christian Greek Scriptures, Sir Frederic Kenyon stated: “The interval then between the dates of original composition and the earliest extant evidence becomes so small as to be in fact negligible, and the last foundation for any doubt that the Scriptures have come down to us substantially as they were written has now been removed. Both the authenticity and the general integrity of the books of the New Testament may be regarded as finally established.”—The Bible and Archæology, 1940, pp. 288, 289.


Centuries ago, Jesus Christ, “the faithful and true witness” (Re 3:14), repeatedly and emphatically confirmed the genuineness of the Hebrew Scriptures, as did his apostles. (Lu 24:27, 44; Ro 15:4) Extant ancient versions, or translations, further bespeak the exactness of the preserved Hebrew Scriptures. Manuscripts and versions of the Christian Greek Scriptures bear unassailable testimony to the marvelous preservation and accurate transmission of that portion of God’s Word. We are therefore now favored with an authentic, thoroughly reliable Bible text. A thoughtful examination of preserved manuscripts of the Holy Scriptures bears eloquent testimony to their faithful preservation and permanence, giving added meaning to the inspired statement: “The green grass has dried up, the blossom has withered; but as for the word of our God, it will last to time indefinite.”—Isa 40:8; 1Pe 1:24, 25.

Exaptation:Darwinian code for spin?

Darwinism's tree of life examined

It's Design all the way down VIII

It's design all the way down VII

UT Southwestern physiologists uncover a new code at the heart of biology
UT SOUTHWESTERN MEDICAL CENTER

DALLAS - Sept. 23, 2015 - UT Southwestern physiologists trying to understand the genetic code have found a previously unknown code that helps explain which protein should be created to form a particular type of cell.

The human body is made up of tens of trillions of cells. Each cell contains thousands of proteins, which determine how the cell should form and what functions it needs to perform. Proteins, in turn, are made up of hundreds of amino acids. The blueprint for each protein is specified by genetic codons, which are triplets of nucleotides that can make 20 different types of amino acids. The way in which amino acids are linked together then determines which proteins are eventually produced, and in turn, what functions the cell will have.

What researchers found was that not only does the sequence of the amino acids matter, but so does the speed of the process in which the amino acids are put together into a functional protein.

"Our results uncovered a new 'code' within the genetic code. We feel this is quite important, as the finding uncovers an important regulatory process that impacts all biology," said Dr. Yi Liu, Professor of Physiology.

It was long known that almost every amino acid can be encoded by multiple synonymous codons and that every organism, from humans to fungi, has a preference for certain codons. The researchers found that more frequently used codons ? the "preferred codons" ? speed up the process of producing an amino acid chain, while less frequently produced codons slow the process. The use of either preferred or non-preferred codons is like having speed signs on the protein production highway: some segments need to be made fast and others slow.

 "The genetic code of nucleic acids is central to life, as it specifies the amino acid sequences of proteins," said Dr. Liu, the Louise W. Kahn Scholar in Biomedical Research. "By influencing the speed with which a protein is assembled from amino acid building blocks, the use of "fast" and "slow" codons can affect protein folding, which is the process that allows a protein to form the right shape to perform a specific function. This speed control mechanism makes sure that proteins are assembled and folded properly in different cells. Therefore, the genetic code not only specifies the sequence of amino acids but also the shape of the protein."

The researchers found that proteins with identical amino acid sequences can have different functions if they are assembled at different speeds. This can have important implications for identifying human disease-causing mutations because this study indicates that a mutation does not have to change amino acid identity to cause a disease. In fact, most mutations in human DNA do not result in amino acid change.

"Therefore, our study indicates that the new "code" ? the speed limit of assembly ? within the genetic code can dictate the ultimate function of a given protein," said Dr. Liu.

The findings appear as the cover story of the journal Molecular Cell, one of the top molecular biology, biophysics, and biochemistry journals.

The latest findings extend prior research published by Dr. Liu and colleagues in Nature in 2013 that broke new ground by demonstrating that synonymous codons of a circadian clock protein are not the same in making functional proteins, despite the fact that they encode the same amino acids.  Genes can adapt to different environmental changes by choosing the most optimal codon, which is counterintuitive to natural selection.

Dr. Liu and his team are able to study these systems using a type of bread mold fungus called Neurospora crassa. The use of the mold allows for easy manipulation of its genes and codons in the laboratory that are more difficult to do in animals. Dr. Liu's lab is also trying to unravel the secrets of chronobiology and the molecular mechanisms that underlie an organism's daily biological clock, called the circadian clock. Biological clocks have been described in almost all organisms ranging in complexity from single cell organisms to mammals, and to function in the control of daily rhythms such as sleep-wake and activity cycles, body temperature cycles, endocrine functions, and gene expression.

###

Other UT Southwestern researchers involved include postdoctoral researchers Chien-Hung Yu, Yunkun Dang, Zhipeng Zhou, first co-authors, and graduate student researcher Fangzhou Zhao. They collaborated with the lab of Dr. Matthew Sachs, Professor of Biology at Texas A&M University.

The work is supported by grants from the National Institutes of Health and the Welch Foundation.

About UT Southwestern Medical Center


UT Southwestern, one of the premier academic medical centers in the nation, integrates pioneering biomedical research with exceptional clinical care and education. The institution's faculty includes many distinguished members, including six who have been awarded Nobel Prizes since 1985. The faculty of more than 2,700 is responsible for groundbreaking medical advances and is committed to translating science-driven research quickly to new clinical treatments. UT Southwestern physicians provide medical care in 40 specialties to about 92,000 hospitalized patients and oversee approximately 2.1 million outpatient visits a year.

Sunday 1 November 2015

On the Hubris of Scientism?

Human Cloning Advance: Ban Now or Cry Later
Wesley J. Smith November 1, 2015 4:45 AM 


Human cloning used to make big headlines. But "the scientists" got smart, and just started using the scientific term for cloning -- somatic cell nuclear transfer -- as a way of hiding in plain sight.

Thus, when the first human embryos were successfully manufactured via SCNT, the were few headlines and most people yawned -- if they heard about it at all. Of course, I reacted strongly.

Now, the South Koreans have improved the efficiency of cloning, and again, the scientists are keeping mostly mum in the popular media so as to not alert us rubes that Brave New World is approaching. From the KBS World News Radio story:

A group of medical experts has succeeded at improving the efficiency of human somatic cell nuclear transfer (SCNT) by three times.

A research team at Cha Medical Group said Friday that it found ways to enhance the efficiency of SCNT by discovering a correlation between the quality of female eggs and the success rate of SCNT embryo development.,,

The team said it has made five pilot medicine products using the new findings and plans to seek the government's approval for a large-sized clinical test by the end of this year.


Now, add in the jet-speed advance in genetic engineering known as CRSPR. We are coming closer to the day of manufacturing human beings via cloning, genetically engineered for desired traits.

On non-verbal communication

On those still in chains

Saturday 31 October 2015

On pitching a design inference to a hostile audience.

For SETI Researchers, Here Is a Guide for Handling Fallacious Objections
Casey Luskin October 30, 2015 11:08 AM


A recent story making the rounds, "Space anomaly gets extraterrestrial intelligence experts' attention," claims that the Search for Extra Terrestrial Intelligence (SETI) project has found "a strange star" that "could mean alien life." As David Klinghoffer noted in an earlier post, the raw data entails odd fluctuations in the intensity of light coming from a star. CNN reports:

The Search for Extraterrestrial Intelligence Institute has its eyes -- and soon possibly one of the United States' premier telescopes -- focused on an anomaly that some astronomers can't quite explain.
[...]

"What was unusual about that was the depth of the light dips, up to 20% decrease in light, and the timescales (of light variation) -- a week to a couple of months."

So what's the explanation? Could it be from a swarm of comets? Some sort of intergalactic phenomenon that Earthbound scientists haven't discovered? Or an effect of planet-sized structures built by some sort of alien civilization?

Comparisons between SETI's methodology and the theory of intelligent design (ID) have been made since ID's earliest days. Both SETI and ID seek to detect the signs of intelligence in the world around us. SETI focuses on looking for evidence of extraterrestrial civilizations far away in the universe. ID looks for signs of intelligent agency in the origin of living organisms and the universe itself.
SETI and ID share something else: they both try to be very conservative and cautious, invoking intelligent causation only when it is clearly warranted by the evidence. Here's how one SETI scientist handles this:

Jason Wright, a Penn State astronomy professor, saw Boyajian's data and can't quite explain it. But in a post Thursday to his website, he cautioned against jumping to conclusions -- as some apparently have -- that intelligent beings far away are behind this oddity.
"My philosophy of SETI," Wright wrote, referring to the search for extraterrestrial intelligence, "is that you should reserve your alien hypothesis as a last resort." He also cited "Cochran's Commandment to planet hunters ... Thou shalt not embarrass thyself and they colleagues by claiming false planets.

That's a good philosophy, and ID takes a similar approach. ID proponents only conclude in favor of design when it's clear that known material causes cannot explain the observed phenomena and when the data is best explained by intelligence.
So far, SETI hasn't found a case that is clearly explained by some extraterrestrial civilization. This recent find of a star with flickering light is nowhere near enough evidence to conclude that aliens are the best explanation -- in fact Tech Insider reports that the data could be explained by a "lopsided star" wherein its irregular shape "creates patches of darker and lighter regions within these kinds of stars, so the light curves that make it back to Earth won't look completely uniform."

But suppose SETI were to one day discover strong evidence of some extraterrestrial civilization -- enough to warrant a design inference. They might expect to face some of the same fallacious objections that ID faces. They might like some friendly tips on handling them. Here's a little guide for SETI folks if that day ever comes:

Who Made the Aliens?

As soon as you claim you've detected aliens, skeptics will say "How can you claim there are aliens when you haven't explained who made the aliens?"

The answer to this is very simple: We don't need to be able to explain the origin of the aliens to recognize evidence of them. For example, let's say that Chewbacca, Spock, and ET were standing right in front of you. Would you say to them, "Look, I'm not going to believe any of you actually exist until you tell me where you came from"?

(I should add that it could be very fair to ask where the aliens came from because in an ultimate sense they require an explanation -- but it's not a fair question to ask if your only purpose is to question whether those aliens exist.)

Where's Your "Alien-O'Meter"?

Some critics might reply "You need some kind of an 'alien-o-meter' to show that these aliens really exist before you can claim that you've detected evidence of an extraterrestrial civilization. After all, how do we know that aliens were behind the evidence you've discovered if we don't know the aliens exist?"

The answer to this one is a bit more complicated. But a little explanation shows this objection to be nonsensical and based upon a complete misunderstanding of how we make scientific inferences.

Some ID critics mistakenly think you have to directly witness the designer in action with your own eyes in order to detect design. Sometimes misguided creationists make an analogous critique of evolution, saying that you can never infer evolution if no one was around to see it. Both groups misunderstand the nature of historical sciences.

Historical sciences operate under the principle of uniformitarianism, which assumes that the way the natural world works today is similar to how it worked in the past. In other words, "the present is the key to the past." If we see certain causes at work in the world as we know it and we learn to recognize their known effects, then when we find those same effects in the historical record, we can infer that the same causes were at work. As I have explained before:

Recently an atheist student emailed me to ask how it's reasonable to claim that an "unobserved designer" is responsible for complex features of nature, like high CSI (complex specified information) and irreducibly complex structures. In reply, I explained that first we must ask the question "What does it mean to 'observe' or 'detect' something?" Here's a start:
Our eyes can help us observe objects in nature by seeing light reflected from those objects.
Our ears can help us detect objects in nature by receiving sound emitted from them.
Our nose can help us detect objects in nature by receiving emitted chemicals which we register as a "smell."
Our skin can help us detect objects in nature by receiving signals that tell us about shape, texture, and even temperature.
So when we see a campfire, how do we "observe" it? Our sense organs receive patterns of light, sound, smell, and heat, which our brains recognize and match to fires we've seen in the past. Our brain thinks, in effect, "Okay, as in the past, when the eyes receive a particular pattern of yellow and red light, the ears hear a crackling sound, the nose receives the smell of smoke, and the skin feels heat, that's a campfire." So we recognize and observe something by receiving a pattern of information through our sense organs and then matching it to a pattern we've seen in the past.
Our senses also make another set of observations about a campfire: the morning after a campfire, we observe that there's a bunch of blackened and charred wood, ash and soot, and smoke rising from within a circle of blackened stones. We smell the smoke and ash, and it might be slightly warm from remaining embers from the night before.

So let's say now that we're taking a morning stroll and come upon a circle of blackened stones, charred wood, ash, and soot. There's a little smoke rising from the center, and it's slightly warm. We didn't see a fire directly with our eyes. But our senses tell us that there is evidence that a fire was there. In this case, the most reasonable inference to make is that there was a campfire, even though we can't directly observe it.

Thus, just because something is "unobservable" by our eyes at this exact moment, doesn't mean we can't find compelling evidence that it exists, or that it was present. We must not toss out the word "unobservable" as if it somehow blocks the design inference. We regularly make inferences to unobserved objects and events (like a campfire) by using our senses to detect evidence that reliably indicates that a particular object or event was present (like finding a circle of blackened stones, charred wood, soot, and smoke).

We can use exactly the same method of reasoning to detect design at the heart of biology. In all of our experience, high CSI and irreducible complexity ONLY come from intelligent agents. Thus, based upon our experience of the cause-and-effect structure of the world we observe around us, we are justified in inferring that a mind was at work. ...[W]hen we find high CSI entities like language-based digital codes or irreducibly complex molecular machines, we are justified in inferring that an intelligent agent was at work. Why? Because, in our experience, these things always trace back to a mind. We might not directly see that mind, but we can infer that a mind was present to create the known observed effects.

This is the positive argument for intelligent design, and it is just like inferring that a campfire was present based on remaining physical evidence. One need not directly see the fire, or know who tended it, or why he or she or they did so, to draw a reasonable inference that a fire was present.

So to the critic who asks "Where's the alien-o-meter," SETI's response might go like this: We have an alien-o-meter, but it's not what you think it is. We don't need to Skype with ET to potentially know he's there. If we find in space the kind of evidence that, in our experience, only comes from intelligent beings, then we can infer that ETs exist.
Aliens of the Gaps

A last objection the SETI researcher will face goes like this: You're never allowed to conclude that aliens are responsible for anything because someday we might find a fully material, physical explanation other than ETs for the evidence you claim demonstrates an extraterrestrial civilization. As materialist explanations advance, your "alien" theory will just retreat into the gaps of our knowledge.

Now this objection might have a little more traction than the others. Nobody wants to invoke intelligent aliens only to have them later explained away by some unintelligent material cause. As SETI proponent Jason Wright said, it should be a "last resort." And indeed, in this case that's a good philosophy since the "lopsided star" theory seems to explain the observed data quite well.

But does the fact that some cases aren't best explained by intelligence that mean you can never invoke intelligent causes? Of course not! It just means one needs to be careful and cautious about invoking intelligent design.

What the gaps fallacy really says is, "While your explanation may seem correct today, new evidence may be revealed tomorrow to provide a material explanation and show that intelligent causes aren't the best explanation." That's a fair point, but the reality is that every type of explanation -- material or intelligent -- is subject to the same problem.

Indeed, any explanation could be subject to the "gaps" charge. This is a problem that every kind of explanation in science potentially faces. That's why scientific explanations are always held tentatively and never asserted with complete finality or absolute certainty. Scientific explanations are always subject to revision if newly uncovered data shows they are wrong. This is true whether we're dealing with Darwinian evolution or intelligent design, aliens or standard stellar dynamics.

So at the end of the day, what the "gaps" objection really ought to say is "Today X is the best explanation, but let's hold it tentatively." Nothing wrong with that -- that's how all science ought to work.

What the gaps charge often indicates is that some kind of explanation is assumed to be the default, privileged answer, and that we can only deviate from that default answer under extraordinary circumstances. In the case of intelligent design or SETI, it's material causes that are being privileged. Many who make the "gaps" charge want material causes to have an absolute privilege that precludes making a design inference in all circumstances. But given that we can detect intelligent causation, why should material causes enjoy such an absolute privilege?

Unless we are to privilege material causes on principle and deny our ability to ever infer intelligent causes, the gaps objection fails. But since we know what intelligent causes can do, and because we can reliably detect the prior action of intelligent agents, we can't say that in all cases it's wrong to detect design. We can detect design, and so long as we hold the conclusion of design tentatively, the gaps objection isn't fatal.

Don't Miss the Irony

Now I personally don't object to SETI researchers doing their thing, but I'm highly skeptical that they're ever going to find an extraterrestrial civilization. But my reason for writing this isn't to rant against SETI. It's just to point out the irony. People make a lot of fallacious objections against intelligent causation. We in the ID movement get this all the time. It sounds like, "Who designed the designer?" or "Where's your theo-meter?" or "This is just God of the gaps." If SETI claimed to find some extraterrestrial intelligent civilization, most likely the analagous objections would never come up, at least not with much force.

Why is that? Most materialists would see extraterrestrial life as proof that a naturalistic origin of life is possible, and that perhaps life is therefore common in our universe. After all, what drives many materialists to look for evidence of extraterrestrial life is a misguided assumption that if aliens exist, it would somehow validates their worldview.


But they are mistaken about what SETI means. If we found evidence of an alien civilization, that wouldn't be evidence that life evolves naturally. It would just be evidence for an extraterrestrial civilization. That's it. How it arose would be an entirely different question. And all indications we have so far show that life could not arise naturally, whether on earth or anywhere else. For all we know, finding evidence of extraterrestrial life could end up being yet another piece of evidence pointing to intelligent design.

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Thursday 29 October 2015

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Wednesday 28 October 2015

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