Search This Blog

Monday 2 February 2015

On darwinism's alleged 'tree of life'

Editor's note: This is Part 6 of a 10-part series based upon Casey Luskin's chapter,, "The Top Ten Scientific Problems with Biological and Chemical Evolution," in the volume More than Myth, edited by Paul Brown and Robert Stackpole (Chartwell Press, 2014). Previous installments can be found here:Problem 1Problem 2Problem 3Problem 4Problem 5. When the series is complete, the full chapter will be posted online.
When fossils failed to demonstrate that animals evolved from a common ancestor, evolutionary scientists turned to another type of evidence -- DNA sequence data -- to demonstrate a tree of life. In the 1960s, around the time the genetic code was first understood, biochemists Émile Zuckerkandl and Linus Pauling hypothesized that if DNA sequences could be used to produce evolutionary trees -- trees that matched those based upon morphological or anatomical characteristics -- this would furnish "the best available single proof of the reality of macro-evolution."99 Thus began a decades-long effort to sequence the genes of many organisms and construct "molecular" based evolutionary ("phylogenetic") trees. The ultimate goal has been to construct a grand "tree of life," showing how all living organisms are related through universal common ancestry.
The Main Assumption
The basic logic behind building molecular trees is relatively simple. First, investigators choose a gene, or a suite of genes, found across multiple organisms. Next, those genes are analyzed to determine their nucleotide sequences, so the gene sequences of various organisms can then be compared. Finally, an evolutionary tree is constructed based upon the principle that the more similar the nucleotide sequence, the more closely related the species. A paper in the journalBiological Theory puts it this way:
[M]olecular systematics is (largely) based on the assumption, first clearly articulated
by Zuckerkandl and Pauling (1962), that degree of overall similarity reflects degree of relatedness.100
This assumption is essentially an articulation of a major feature of the theory - the idea of universal common ancestry. Nonetheless, it's important to realize that it is a mere assumption to claim that genetic similarities between different species necessarily result common ancestry.
Operating strictly within a Darwinian paradigm, these assumptions flow naturally. As the aforementioned Biological Theory paper explains, the main assumption underlying molecular trees "derives from interpreting molecular similarity (or dissimilarity) between taxa in the context of a Darwinian model of continual and gradual change."101 So the theory is assumed to be true to construct a tree. But also, if Darwinian evolution is true, construction of trees using different sequences should reveal a reasonably consistent pattern across different genes or sequences.
This makes it all the more significant that efforts to build a grand "tree of life" using DNA or othebiological sequence data have not conformed to expectations. The basic problem is that one gene gives one version of the tree of life, while another gene gives a highly different, and conflicting, version of the tree. For example, as we'll discuss further below, the standard mammalian tree places humans more closely related to rodents than to elephants. But studies of a certain type of DNA called microRNA genes have suggested the opposite -- that humans were closer to elephants than rodents. Such conflicts between gene-based trees are extremely common.
The genetic data is thus not painting a consistent picture of common ancestry, showing the assumptions behind tree-building commonly fail. This leads to justifiable questions about whether universal common ancestry is correct.
Conflicts in the Base of the Tree of Life
Problems first arose when molecular biologists sequenced genes from the three basic domains of life -- bacteria, archaea, and eukarya -- but those genes did not allow these basic groups of life to be resolved into a treelike pattern. In 2009, the journal New Scientist published a cover story titled, "Why Darwin was wrong about the tree of life" which explained these quandaries
The problems began in the early 1990s when it became possible to sequence actual bacterial and archaeal genes rather than just RNA. Everybody expected these DNA sequences to confirm the RNA tree, and sometimes they did but, crucially, sometimes they did not. RNA, for example, might suggest that species A was more closely related to species B than species C, but a tree made from DNA would suggest the reverse.102
This sort of data led biochemist W. Ford Doolittle to explain that "Molecular phylogenists will have failed to find the 'true tree,' not because their methods are inadequate or because they have chosen the wrong genes, but because the history of life cannot properly be represented as a tree."103 New Scientist put it this way: "For a long time the holy grail was to build a tree of life ... But today the project lies in tatters, torn to pieces by an onslaught of negative evidence."104
Many evolutionists sometimes reply that these problems arise only when studying microorganisms like bacteria -- organisms which can swap genes through a process called "horizontal gene transfer," thereby muddying the signal of evolutionary relationships. But this objection isn't quite true, since the tree of life is challenged even among higher organisms where such gene-swapping is not prevalent. Carl Woese, a pioneer of evolutionary molecular systematics, explains
Phylogenetic incongruities can be seen everywhere in the universal tree, from its root to the major branchings within and among the various taxa to the makeup of the primary groupings themselves.105
Likewise, the New Scientist article notes that "research suggests that the evolution of animals and plants isn't exactly tree-like either."106 The article explains what happened when microbiologist Michael Syvanen tried to create a tree showing evolutionary relationships using 2000 genes from a diverse group of animals:
He failed. The problem was that different genes told contradictory evolutionary stories. ... the genes were sending mixed signals. ... Roughly 50 per cent of its genes have one evolutionary history and 50 per cent another.107
The data were so difficult to resolve into a tree that Syvanen lamented, "We've just annihilated the tree of life."108 Many other papers in the technical literature recognize similar problems.
Conflicts Between Higher Branches
A 2009 paper in Trends in Ecology and Evolution notes that, "A major challenge for incorporating such large amounts of data into inference of species trees is that conflicting genealogical histories often exist in different genes throughout the genome."109 Similarly, a paper in Genome Researchstudied the DNA sequences in various animal groups and found that "different proteins generate different phylogenetic tree[s]."110 A June, 2012 article in Nature reported that short strands of RNA called microRNAs "are tearing apart traditional ideas about the animal family tree." Dartmouth biologist Kevin Peterson who studies microRNAs lamented, "I've looked at thousands of microRNA genes, and I can't find a single example that would support the traditional tree." According to the article, microRNAs yielded "a radically different diagram for mammals: one that aligns humans more closely with elephants than with rodents." Peterson put it bluntly: "The microRNAs are totally unambiguous ... they give a totally different tree from what everyone else wants."111
Conflicts Between Molecules and Morphology
Not all phylogenetic trees are constructed by comparing molecules like DNA from different species. Many trees are based upon comparing the form, structure, and body plan of different organisms -- also called "morphology." But conflicts between molecule-based trees and morphology-based trees are also common. A 2012 paper studying bat relationships made this clear, stating: "Incongruence between phylogenies derived from morphological versus molecular analyses, and between trees based on different subsets of molecular sequences has become pervasive as datasets have expanded rapidly in both characters and species."112 This is hardly the only study to encounter conflicts between DNA-based trees and trees based upon anatomical or characteristics. Textbooks often claim common descent is supported using the example of a tree of animals based upon the enzyme cytochrome c which matches the traditional evolutionary tree based upon morphology.113 However, textbooks rarely mention that the tree based upon a different enzyme, cytochrome b, sharply conflicts with the standard evolutionary tree. As one article in Trends in Ecology and Evolution observed:
[T]he mitochondrial cytochrome b gene implied . . . an absurd phylogeny of mammals, regardless of the method of tree construction. Cats and whales fell within primates, grouping with simians (monkeys and apes) and strepsirhines (lemurs, bush-babies and lorises) to the exclusion of tarsiers. Cytochrome b is probably the most commonly sequenced gene in vertebrates, making this surprising result even more disconcerting.114
Strikingly, a different article in Trends in Ecology and Evolution concluded, "the wealth of competing morphological, as well as molecular proposals [of] the prevailing phylogenies of the mammalian orders would reduce [the mammalian tree] to an unresolved bush, the only consistent [evolutionary relationship] probably being the grouping of elephants and sea cows."115 Because of such conflicts, a major review article in Nature reported, "disparities between molecular and morphological trees" lead to "evolution wars" because "[e]volutionary trees constructed by studying biological molecules often don't resemble those drawn up from morphology."116
Finally, a study published in Science in 2005 tried to use genes to reconstruct the relationships of the animal phyla, but concluded that "[d]espite the amount of data and breadth of taxa analyzed, relationships among most [animal] phyla remained unresolved." The following year, the same authors published a scientific paper titled, "Bushes in the Tree of Life," which offered striking conclusions. The authors acknowledge that "a large fraction of single genes produce phylogenies of poor quality," observing that one study "omitted 35% of single genes from their data matrix, because those genes produced phylogenies at odds with conventional wisdom." The paper suggests that "certain critical parts of the [tree of life] may be difficult to resolve, regardless of the quantity of conventional data available." The paper even contends that "[t]he recurring discovery of persistently unresolved clades (bushes) should force a re-evaluation of several widely held assumptions of molecular systematics."117
Unfortunately, one assumption that these evolutionary biologists aren't willing to re-evaluate is the assumption that universal common ancestry is correct. They appeal to a myriad of ad hocarguments -- horizontal gene transfer, long branch attraction, rapid evolution, different rates of evolution, coalescent theory, incomplete sampling, flawed methodology, and convergent evolution -- to explain away inconvenient data which doesn't fit the coveted treelike pattern. As a 2012 paper stated, "phylogenetic conflict is common, and frequently the norm rather than the exception."118 At the end of the day, the dream that DNA sequence data would fit into a nice-neat tree of life has failed, and with it a key prediction of neo-Darwinian theory.
References:
[99.] Zuckerkandl and Pauling, "Evolutionary Divergence and Convergence in Proteins," 101.
[100.] Jeffrey H. Schwartz, Bruno Maresca, "Do Molecular Clocks Run at All? A Critique of Molecular Systematics," Biological Theory, 1(4):357-371, (2006).
[101.] Ibid.
[102.] Graham Lawton, "Why Darwin was wrong about the tree of life," New Scientist (January 21, 2009).
[103.] W. Ford Doolittle, "Phylogenetic Classification and the Universal Tree," Science, 284:2124-2128 (June 25, 1999).
[104.] Partly quoting Eric Bapteste, in Lawton, "Why Darwin was wrong about the tree of life" (internal quotations omitted).
[105.] Carl Woese "The Universal Ancestor," Proceedings of the National Academy of Sciences USA, 95:6854-9859 (June, 1998) (emphasis added).
[106.] Graham Lawton, "Why Darwin was wrong about the tree of life," New Scientist (January 21, 2009).
[107.] Partly quoting Michael Syvanen, in Lawton, "Why Darwin was wrong about the tree of life" (internal quotations omitted).
[108.] Michael Syvanen, quoted in Lawton, "Why Darwin was wrong about the tree of life."
[109.] James H. Degnan and Noah A. Rosenberg, "Gene tree discordance, phylogenetic inference and the multispecies coalescent," Trends in Ecology and Evolution, 24 (2009): 332-340.
[110.] Arcady R. Mushegian, James R. Garey, Jason Martin and Leo X. Liu, "Large-Scale Taxonomic Profiling of Eukaryotic Model Organisms: A Comparison of Orthologous Proteins Encoded by the Human, Fly, Nematode, and Yeast Genomes," Genome Research, 8 (1998): 590-598.
[111.] Elie Dolgin, "Rewriting Evolution," Nature, 486: 460-462 (June 28, 2012).
[112.] Liliana M. Dávalos, Andrea L. Cirranello, Jonathan H. Geisler, and Nancy B. Simmons, "Understanding phylogenetic incongruence: lessons from phyllostomid bats," Biological Reviews of the Cambridge Philosophical Society, 87:991-1024 (2012).
[113.] For example, see BSCS Biology: A Molecular Approach (Glencoe/McGraw Hill, 2006), 227; Sylvia S. Mader, Jeffrey A. Isaacson, Kimberly G. Lyle-Ippolito, Andrew T. Storfer, Inquiry Into Life, 13th ed. (McGraw Hill, 2011), 550.
[114.] See Michael S. Y. Lee, "Molecular Phylogenies Become Functional," Trends in Ecology and Evolution, 14: 177 (1999).
[115.]W. W. De Jong, "Molecules remodel the mammalian tree," Trends in Ecology and Evolution, 13(7), pp. 270-274 (July 7, 1998).
[116.] Trisha Gura, "Bones, Molecules or Both?," Nature, 406 (July 20, 2000): 230-233.
[117.] Antonis Rokas & Sean B. Carroll, "Bushes in the Tree of Life," PLoS Biology, 4(11): 1899-1904 (Nov., 2006) (internal citations and figures omitted).
[118.] Liliana M. Dávalos, Andrea L. Cirranello, Jonathan H. Geisler, and Nancy B. Simmons, "Understanding phylogenetic incongruence: lessons from phyllostomid bats," Biological Reviews of the Cambridge Philosophical Society, 87:991-1024 (2012).

Sunday 1 February 2015

Darwinism's quest for junk rolls on.

Why the "Onion Test" Fails as an Argument for "Junk DNA"

The ancient roots of Darwinism

1. Ancient Greek Views

Evolution is not so much a modern discovery as some of its advocates would have us believe. It made its appearance early in Greek philosophy, and maintained its position more or less, with the most diverse modifications, and frequently confused with the idea of emanation, until the close of ancient thought. The Greeks had, it is true, no term exactly equivalent to " evolution"; but when Thales asserts that all things originated from water; when Anaximenes calls air the principle of all things, regarding the subsequent process as a thinning or thickening, they must have considered individual beings and the phenomenal world as, a result of evolution, even if they did not carry the process out in detail. Anaximander is often regarded as a precursor of the modem theory of development. He deduces living beings, in a gradual development, from moisture under the influence of warmth, and suggests the view that men originated from animals of another sort, since if they had come into existence as human beings, needing fostering care for a long time, they would not have been able to maintain their existence. In Empedocles, as in Epicurus and Lucretius, who follow in Hs footsteps, there are rudimentary suggestions of the Darwinian theory in its broader sense; and here too, as with Darwin, the mechanical principle comes in; the process is adapted to a certain end by a sort of natural selection, without regarding nature as deliberately forming its results for these ends.
If the mechanical view is to be found in these philosophers, the teleological occurs in Heraclitus, who conceives the process as a rational development, in accordance with the Logos and names steps of the process, as from igneous air to water, and thence to earth. The Stoics followed Heraclitus in the main lines of their physics. The primal principle is, as with him, igneous air. only that this is named God by them with much greater definiteness. The Godhead has life in itself, and develops into the universe, differentiating primarily into two kinds of elements the finer or active, and the coarser or passive. Formation or development goes on continuously, under the impulse of the formative principle, by whatever name it is known, until all is once more dissolved by theekpyrosis into the fundamental principle, and the whole process begins over again. Their conception of the process as analogous to the development of the seed finds special expression in their term of logos spermatikos. In one point the Stoics differ essentially from Heraclitus. With them the whole process is accomplished according to certain ends indwelling in the Godhead, which is a provident, careful intelligence, while no providence is assumed in Heraclitus.
Empedocles asserts definitely that the sphairos, as the full reconciliation of opposites, is opposed, as the superior, to the individual beings brought into existence by hatred, which are then once more united by love to the primal essence, the interchange of world-periods thus continuing indefinitely. Development is to be found also in the atomistic philosopher Democritus; in a purely mechanical manner without any purpose, bodies come into existence out of atoms, and ultimately entire worlds appear and disappear from and to eternity. Like his predecessors, Deinocritus, deduces organic beings from what is inorganic-moist earth or slime.
Development, as well as the process of becoming, in general, was denied by the Eleatic philosophers. Their doctrine, diametrically opposed to the older thoroughgoing evolutionism, had its influence in determining the acceptance of unchangeable ideas, or forms, by Plato and Aristotle. Though Plato reproduces the doctrine of Heraclitus as to the flux of all things in the phenomenal world, he denies any continuous change in the world of ideas. Change is permanent only in so far as the eternal forms stamp themselves upon individual objects. Though this, as a rule, takes place but imperfectly, the stubborn mass is so far affected that all works out as far as possible for the best. The demiurge willed that all should become as far as possible like himself; and so the world finally becomes beautiful and perfect. Here we have a development, though the principle which has the most real existence does not change; the forms, or archetypal ideas, remain eternally what they are.
In Aristotle also the forms are the real existences, working in matter but eternally remaining the same, at once the motive cause and the effectual end of all things. Here the idea of evolution is clearer than in Plato, especially for the physical world, which is wholly dominated by purpose. The transition from lifeless to living matter is a gradual one, so that the dividing-line between them is scarcely perceptible. Next to lifeless matter comes the vegetable kingdom, which seems, compared with the inorganic, to have life, but appears lifeless compared with the organic. The transition from plants to animals is again a gradual one. The lowest organisms originate from the primeval slime, or from animal differentiation; there is a continual progression from simple, undeveloped types to the higher and more perfect. As the highest stage, the end and aim of the whole process, man appears; all lower forms are merely unsuccessful attempts to produce him. The ape is a transitional stage between man and other viviparous animals. If development has so important a work in Aristotle's physics, it is not less important in his metaphysics. The whole transition from potentiality to actuality (from dynamis toentelecheia) is nothing but a transition from the lower to the higher, everything striving to assimilate itself to the absolutely perfect, to the Divine. Thus Aristotle, like Plato, regards the entire order of the universe as a sort of deification. But the part played in the development by the Godhead, the absolutely immaterial form, is less than that of the forms which operate in matter, since, being already everything,, it is incapable of becoming anything else. Thus Aristotle, despite his evolutionistic notions, does not take the view of a thoroughgoing evolutionist as regards the universe; nor do the Neoplatonists, whose highest principle remains wholly unchanged, though all things emanate from it.

2. Medieval Views

The idea of evolution was not particularly dominant in patristic and scholastic theology and philosophy, both on account of the dualism which runs through them as an echo of Plato and Aristotle, and on account of the generally accepted Christian theory of creation. However, evolution is not generally denied; and with Augustine (De civitate dei, xv. 1) it is taken as the basis for a philosophy of history. Erigena and some of his followers seem to teach a sort of evolution. The issue of finite beings from God is called analysis or resolution in contrast to the reverse ordeification the return to God, who once more assimilates all things. God himself, although denominated the beginning, middle, and end, all in all remains unmixed in his own essence, transcendent though immanent in the world. The teaching of. Nicholas of Cusa is similar to Erigena's, though a certain amount of Pythagoreanism comes in here. The world exhibits explicitly what the Godhead implicitly contains; the world is an animated, ordered whole, in which God is everywhere present. Since God embraces all things in himself, he unites all opposites: he is thecomplicatio omnium contradictoriorum. The idea of evolution thus appears in Nicholas in a rather pantheistic form, but it is not developed.
In spite of some obscurities in his conception of the world Giordano Bruno is a little clearer. According to him God is the immanent first cause in the universe; there is no difference between matter and form; matter, which includes in itself forms and ends, is the source of all becoming and of all actuality. The infinite ether which fills infinite space conceals within itself the nucleus of all things, and they proceed from it according to determinate laws, yet in a teleological manner. Thus the worlds originate not by an arbitrary act, but by an inner necessity of the divine nature. They arenatura naturata, as distinguished from the operative nature of God, natitra naturans, which is present in all thin-S as the being- of all that is, the beauty of all that is fair. As in the Stoic teaching, with which Bruno's philosophy has much in common, the conception of evolution comes out clearly both for physics and metaphysics.

The Mystery revealed.





BABYLON THE GREAT
Among John’s visions recorded in the book of Revelation appear pronouncements of judgment against “Babylon the Great,” as well as a description of her and of her downfall.—Re 14:8; 16:19; chaps 17, 18; 19:1-3.
In Revelation 17:3-5, Babylon the Great is described as a woman arrayed in purple and scarlet, richly adorned, and sitting upon a scarlet-colored wild beast having seven heads and ten horns. Upon her forehead a name is written, “a mystery: ‘Babylon the Great, the mother of the harlots and of the disgusting things of the earth.’” She is also depicted as sitting on “many waters” representing “peoples and crowds and nations and tongues.”—Re 17:1-15.
The luxury and the dominion attributed to Babylon the Great do not allow for simply equating her with the literal city of Babylon in Mesopotamia. After ancient Babylon fell to Cyrus the Persian in 539 B.C.E., it lost its position as a dominant world power, its captives, including the Jews, being freed. Although the city continued to exist even beyond the days of the apostles, and hence existed in John’s day, it was no longer a city of world importance, and it eventually fell into decay and utter ruin. Thus, Babylon the Great must be viewed as a symbolic city, one of which the literal city of Babylon was the prototype. Because the ancient city gives the mystic city its name, it is helpful to consider briefly the outstanding features of Babylon on the Euphrates, features that provide clues as to the identity of the symbolic city of John’s vision.
Characteristics of Ancient Babylon. The founding of the city of Babylon on the Plains of Shinar was concurrent with the attempt at building the Tower of Babel. (Ge 11:2-9) The popular cause to be advanced by the tower and city construction was, not the exaltation of God’s name, but that the builders might “make a celebrated name” for themselves. The ziggurat towers uncovered not only in the ruins of ancient Babylon but elsewhere in Mesopotamia would seem to confirm the essentially religious nature of the original tower, whatever its form or style. The decisive action taken by Jehovah God to overthrow the temple construction clearly condemns it as of a false religious origin. Whereas the Hebrew name given the city, Babel, means “Confusion,” the Sumerian name (Ka-dingir-ra) and the Akkadian name (Bab-ilu) both mean “Gate of God.” Thus the remaining inhabitants of the city altered the form of its name to avoid the original condemnatory sense, but the new or substitute form still identified the city with religion.
The Bible lists Babel first when giving the ‘beginning of Nimrod’s kingdom.’ (Ge 10:8-10) Throughout the Hebrew Scriptures the ancient city of Babylon is featured prominently as the longtime enemy of Jehovah God and his people.
Though Babylon became the capital of a political empire in the seventh and sixth centuries B.C.E., it was outstandingly prominent during its entire history as a religious center from which religious influence radiated in many directions.
Professor Morris Jastrow, Jr., in his work The Religion of Babylonia and Assyria (1898, pp. 699-701), says regarding this: “In the ancient world, prior to the rise of Christianity, Egypt, Persia, and Greece felt the influence of the Babylonian religion. . . . In Persia, the Mithra cult reveals the unmistakable influence of Babylonian conceptions; and if it be recalled what a degree of importance the mysteries connected with this cult acquired among the Romans, another link will be added connecting the ramifications of ancient culture with the civilization of the Euphrates Valley.” In conclusion he refers to “the profound impression made upon the ancient world by the remarkable manifestations of religious thought in Babylonia and by the religious activity that prevailed in that region.”
Babylon’s religious influence is traced eastward to India in the book New Light on the Most Ancient East, by archaeologist V. Childe (1957, p. 185). Among other points he states: “The swastika and the cross, common on stamps and plaques, were religious or magical symbols as in Babylonia and Elam in the earliest prehistoric period, but preserve that character also in modern India as elsewhere.” Thus, ancient Babylon’s religious influence spread out to many peoples and nations, much farther and with greater potency and endurance than did her political strength.
Like mystic Babylon, the ancient city of Babylon, in effect, sat on the waters, located, as it was, astride the Euphrates River and having various canals and water-filled moats. (Jer 51:1, 13; Re 17:1, 15) These waters served as a defense to the city, and they provided the thoroughfares upon which ships brought wealth and luxuries from many sources. Notably, the water of the Euphrates is depicted as drying up prior to Babylon the Great’s experiencing the wrath of divine judgment.—Re 16:12, 19.
Distinguishing Features of Mystic Babylon. The symbolic woman bearing the name Babylon the Great is “the great city that has a kingdom over the kings of the earth,” a kingdom that allows her, in effect, to sit on “peoples and crowds and nations and tongues.” (Re 17:1, 15, 18) A kingdom over other kingdoms and nations is what is defined as an “empire.” Babylon the Great places herself above earthly kings, exercising power and influence over them. She rides the symbolic seven-headed beast, beasts being used elsewhere in the Bible as symbols of political world powers.—See BEASTS, SYMBOLIC.
Some scholars assume that Babylon the Great is a political empire, either Babylon or Rome. We have already seen that Babylon as a political empire had long since ceased to exist when John received his prophetic vision. As to Rome, the nature of its political rule does not harmonize with the description of Babylon the Great’s course and her methods of dominating. She is a harlot, committing fornication with the kings of the earth, making them drunk with the wine of her fornication, misleading the nations by her “spiritistic practice.” (Re 17:1, 2; 18:3, 23) Rome’s dominion, by contrast, was gained and maintained by its ironlike military might and its firm application of Roman law among its provinces and colonies. Recognizing this fact, The Interpreter’s Dictionary of the Bible says: “It is not sufficient to identify Rome and Babylon. Babylon embraces more than one empire or culture. It is defined rather by dominant idolatries than by geographical or temporal boundaries. Babylon is coextensive with the kingdom of that beast which has corrupted and enslaved mankind, and whom the Lamb must conquer (Rev. 17:14) if mankind is to be freed.”—Edited by G. Buttrick, 1962, Vol. 1, p. 338.
The symbol of a harlot or a fornicatrix is used frequently in the Hebrew Scriptures. The nation of Israel was warned against entering into covenant relations with the nations of Canaan because this would lead them to commit “immoral intercourse [“play the harlot,” RS] with their gods.” (Ex 34:12-16) Both Israel and Judah apostatized from the true worship of Jehovah God and were condemned by him as having engaged in harlotry, prostituting themselves to the political nations and their gods. (Isa 1:21; Jer 3:6-10, 13; Eze 16:15-17, 28, 29, 38; Ho 6:10; 7:11; 8:9, 10) It may be noted here that God was not viewing Israel or Judah as mere political entities entering into relations with other political governments. Instead God reprimanded them on the basis of their being in a sacred covenant with him, hence responsible to be a holy people devoted to him and his pure worship.—Jer 2:1-3, 17-21.
A similar usage of this figure is found in the Christian Greek Scriptures. The Christian congregation is likened to a virgin espoused to Christ as her Head and King. (2Co 11:2; Eph 5:22-27) The disciple James warned Christians against committing spiritual adultery through friendship with the world. (Jas 4:4; compare Joh 15:19.) The fornications of Babylon the Great and her “daughters” are of a similar nature and not some unique exception. (The term “daughters” at times is employed in the Bible to refer to the suburbs or surrounding towns of a city or metropolis, as the “dependent towns” [literally, “daughters” in Hebrew] of Samaria and Sodom; see Eze 16:46-48.)
An additional significant factor is that when Babylon the Great goes down under the devastating attack of the ten horns of the symbolic wild beast, her fall is mourned by her companions in fornication, the kings of the earth, and also by the merchants and shippers who dealt with her in supplying luxurious commodities and gorgeous fineries. While these political and commercial representatives survive her desolation, notably no religious representatives are depicted as still on the scene to share in mourning her downfall. (Re 17:16, 17; 18:9-19) The kings of the earth are shown as having judgment executed upon them sometime after mystic Babylon’s annihilation, and their destruction comes, not from the “ten horns,” but from the sword of the King of kings, the Word of God.—Re 19:1, 2, 11-18.
A further distinguishing characteristic of Babylon the Great is her drunkenness, she being pictured as “drunk with the blood of the holy ones and with the blood of the witnesses of Jesus.” (Re 17:4, 6; 18:24; 19:1, 2) She thus is the spiritual counterpart of the ancient city of Babylon, expressing the same enmity toward the true people of God. Significantly, it was to the charge of religious leaders that Jesus laid the responsibility for “all the righteous blood spilled on earth, from the blood of righteous Abel to the blood of Zechariah.” While those words were addressed to religious leaders from among Jesus’ own race, the Jewish nation, and while persecution against Jesus’ followers was particularly intense from that sector for a time, history shows that thereafter the opposition to genuine Christianity came from other sources (the Jews themselves suffering considerable persecution).—Mt 23:29-35.
All the above factors are significant, and they must all be considered in arriving at a true picture of symbolic Babylon the Great and what it represents.

Revelation17NKJV

17 Then one of the seven angels who had the seven bowls came and talked with me, saying to me,[a]“Come, I will show you the judgment of the great harlot who sits on many waters, with whom the kings of the earth committed fornication, and the inhabitants of the earth were made drunk with the wine of her fornication.”
So he carried me away in the Spirit into the wilderness. And I saw a woman sitting on a scarlet beast which was full of names of blasphemy, having seven heads and ten horns. The woman was arrayed in purple and scarlet, and adorned with gold and precious stones and pearls, having in her hand a golden cup full of abominations and the filthiness of her fornication.[b] And on her forehead a name was written:
MYSTERY, BABYLON THE GREAT,

THE MOTHER OF HARLOTS
AND OF THE ABOMINATIONS
OF THE EARTH.

I saw the woman, drunk with the blood of the saints and with the blood of the martyrs of Jesus. And when I saw her, I marveled with great amazement.

The Meaning of the Woman and the Beast

But the angel said to me, “Why did you marvel? I will tell you the mystery of the woman and of the beast that carries her, which has the seven heads and the ten horns. The beast that you saw was, and is not, and will ascend out of the bottomless pit and go to perdition. And those who dwell on the earth will marvel, whose names are not written in the Book of Life from the foundation of the world, when they see the beast that was, and is not, and yet is.[c]
“Here is the mind which has wisdom: The seven heads are seven mountains on which the woman sits.10 There are also seven kings. Five have fallen, one is, and the other has not yet come. And when he comes, he must continue a short time. 11 The beast that was, and is not, is himself also the eighth, and is of the seven, and is going to perdition.
12 “The ten horns which you saw are ten kings who have received no kingdom as yet, but they receive authority for one hour as kings with the beast. 13 These are of one mind, and they will give their power and authority to the beast. 14 These will make war with the Lamb, and the Lamb will overcome them, for He is Lord of lords and King of kings; and those who are with Him are called, chosen, and faithful.”
15 Then he said to me, “The waters which you saw, where the harlot sits, are peoples, multitudes, nations, and tongues. 16 And the ten horns which you saw on[d] the beast, these will hate the harlot, make her desolate and naked, eat her flesh and burn her with fire. 17 For God has put it into their hearts to fulfill His purpose, to be of one mind, and to give their kingdom to the beast, until the words of God are fulfilled. 18 And the woman whom you saw is that great city which reigns over the kings of the earth.”



Saturday 31 January 2015

The late Charles Townes on evidence of design in the cosmos.

More from Nobel Laureate Charles Townes on Scientific Evidence of Design and Purpose in the Cosmos